Started by upstream project "BIOFORMATS-test-repo" build number 302
originally caused by:
Started by upstream project "Trigger" build number 324
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14991014030741046644.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47827_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:03:35,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:03:35,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 04:03:35,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:03:35,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:03:35,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:03:35,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:03:35,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:03:35,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:03:35,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:03:35,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:03:35,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:03:35,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:03:36,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:03:36,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:03:36,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:03:36,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:03:36,154 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:03:36,155 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:03:36,155 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:03:36,155 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:03:36,155 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 04:03:36,156 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 04:03:36,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-29 04:03:36,164] [main] java.version = 17.0.2
[testng] 04:03:36,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:03:36,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:03:36,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_04-03-36.log]
[testng] 04:03:36,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-29 04:03:36,210] [main] testng.directory = /data
[testng] [2024-12-29 04:03:36,210] [main] testng.configDirectory = /config
[testng] [2024-12-29 04:03:36,218] [main] testng.multiplier = 1.0
[testng] [2024-12-29 04:03:36,219] [main] testng.in-memory = false
[testng] [2024-12-29 04:03:36,219] [main] testng.allow-missing = false
[testng] [2024-12-29 04:03:36,219] [main] user.language = en
[testng] [2024-12-29 04:03:36,219] [main] user.country = ${user.country}
[testng] [2024-12-29 04:03:36,219] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-29 04:03:38,461] [main] ----------------------------------------
[testng] [2024-12-29 04:03:38,461] [main] Total files: 14
[testng] [2024-12-29 04:03:38,462] [main] Scan time: 2.242 s (160 ms/file)
[testng] [2024-12-29 04:03:38,462] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-29 04:03:57,009] [pool-1-thread-1] Initializing /data/aaron/olympus_fv500.tif:
[testng] 04:03:57,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:03:57,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:03:57,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_04-03-57.log]
[testng] 04:03:57,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a5778ec - End of configuration.
[testng] [2024-12-29 04:03:57,797] [pool-1-thread-12] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 04:03:57,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:03:57,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:03:57,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_04-03-57.log]
[testng] 04:03:57,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dea054e - End of configuration.
[testng] [2024-12-29 04:03:58,434] [pool-1-thread-11] Initializing /data/timg/eric-three.tif:
[testng] 04:03:58,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:03:58,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:03:58,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_04-03-58.log]
[testng] 04:03:58,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a30a3b6 - End of configuration.
[testng] [2024-12-29 04:03:59,347] [pool-1-thread-10] Initializing /data/timg/eric-one-3d.tif:
[testng] 04:03:59,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:03:59,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:03:59,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_04-03-59.log]
[testng] 04:03:59,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd80ae9 - End of configuration.
[testng] [2024-12-29 04:04:00,057] [pool-1-thread-9] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 04:04:00,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:04:00,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:00,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_04-04-00.log]
[testng] 04:04:00,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@285fac05 - End of configuration.
[testng] [2024-12-29 04:04:00,807] [pool-1-thread-8] Initializing /data/timg/eric-three-projection.tif:
[testng] 04:04:00,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:04:00,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:00,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_04-04-00.log]
[testng] 04:04:00,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2413bd1c - End of configuration.
[testng] [2024-12-29 04:04:01,458] [pool-1-thread-7] Initializing /data/timg/LiveTwo.tif:
[testng] 04:04:01,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:04:01,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:01,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_04-04-01.log]
[testng] 04:04:01,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47439c0 - End of configuration.
[testng] [2024-12-29 04:04:03,291] [pool-1-thread-6] Initializing /data/timg/eric-one.tif:
[testng] 04:04:03,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:04:03,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:03,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_04-04-03.log]
[testng] 04:04:03,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c8f33ea - End of configuration.
[testng] [2024-12-29 04:04:04,024] [pool-1-thread-5] Initializing /data/timg/LiveOne.tif:
[testng] 04:04:04,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:04:04,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:04,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_04-04-04.log]
[testng] 04:04:04,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6087b58c - End of configuration.
[testng] [2024-12-29 04:04:04,667] [pool-1-thread-4] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 04:04:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:04:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:04,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_04-04-04.log]
[testng] 04:04:04,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38404d94 - End of configuration.
[testng] [2024-12-29 04:04:05,372] [pool-1-thread-3] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 04:04:05,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:04:05,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:05,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_04-04-05.log]
[testng] 04:04:05,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2cf2b4 - End of configuration.
[testng] [2024-12-29 04:04:06,083] [pool-1-thread-2] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 04:04:06,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:04:06,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:04:06,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_04-04-06.log]
[testng] 04:04:06,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75276e2d - End of configuration.
[testng] [2024-12-29 04:04:14,762] [pool-1-thread-5] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 49 seconds
Finished: SUCCESS