Started by upstream project "BIOFORMATS-test-repo" build number 304 originally caused by: Started by upstream project "Trigger" build number 326 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13719407309890950622.sh + '[' fei = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48086_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:50:22,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:50:23,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:50:23,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:50:23,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:50:23,031 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:50:23,032 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:50:23,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:50:23,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:50:23,032 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration. [testng] 00:50:23,033 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point [testng] 00:50:23,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 475 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-31 00:50:23,042] [main] java.version = 11.0.16 [testng] 00:50:23,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:50:23,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:23,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_00-50-23.log] [testng] 00:50:23,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-31 00:50:23,092] [main] testng.directory = /data [testng] [2024-12-31 00:50:23,092] [main] testng.configDirectory = /config [testng] [2024-12-31 00:50:23,102] [main] testng.multiplier = 1.0 [testng] [2024-12-31 00:50:23,103] [main] testng.in-memory = false [testng] [2024-12-31 00:50:23,103] [main] testng.allow-missing = false [testng] [2024-12-31 00:50:23,103] [main] user.language = en [testng] [2024-12-31 00:50:23,103] [main] user.country = ${user.country} [testng] [2024-12-31 00:50:23,103] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-31 00:50:28,509] [main] ---------------------------------------- [testng] [2024-12-31 00:50:28,510] [main] Total files: 21 [testng] [2024-12-31 00:50:28,510] [main] Scan time: 5.406 s (257 ms/file) [testng] [2024-12-31 00:50:28,510] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-31 00:50:50,573] [pool-1-thread-1] Initializing /data/venu/VENU.TIF: [testng] 00:50:50,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:50,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:50,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-31_00-50-50.log] [testng] 00:50:50,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ffda0e - End of configuration. [testng] [2024-12-31 00:50:51,821] [pool-1-thread-12] Initializing /data/venu/VENU02.TIF: [testng] 00:50:51,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:51,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:51,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-31_00-50-51.log] [testng] 00:50:51,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa0bf72 - End of configuration. [testng] [2024-12-31 00:50:52,941] [pool-1-thread-11] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 00:50:52,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:52,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:52,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-31_00-50-52.log] [testng] 00:50:52,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13946fdd - End of configuration. [testng] [2024-12-31 00:50:54,315] [pool-1-thread-10] Initializing /data/venu/VENU_Five.TIF: [testng] 00:50:54,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:54,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:54,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_00-50-54.log] [testng] 00:50:54,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e950e9 - End of configuration. [testng] [2024-12-31 00:50:55,647] [pool-1-thread-9] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 00:50:55,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:55,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:55,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-31_00-50-55.log] [testng] 00:50:55,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61527525 - End of configuration. [testng] [2024-12-31 00:50:57,043] [pool-1-thread-8] Initializing /data/venu/VENU02.IMG: [testng] 00:50:57,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:57,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:57,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-31_00-50-57.log] [testng] 00:50:57,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71cd7bee - End of configuration. [testng] [2024-12-31 00:50:57,473] [pool-1-thread-7] Initializing /data/venu/VENU01.TIF: [testng] 00:50:57,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:57,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:57,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-31_00-50-57.log] [testng] 00:50:57,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552eaeb - End of configuration. [testng] [2024-12-31 00:50:58,767] [pool-1-thread-6] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 00:50:58,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:58,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:58,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-31_00-50-58.log] [testng] 00:50:58,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b673677 - End of configuration. [testng] [2024-12-31 00:50:59,984] [pool-1-thread-5] Initializing /data/venu/VENU_Four.TIF: [testng] 00:50:59,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:59,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:59,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-31_00-50-59.log] [testng] 00:50:59,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdd8e78 - End of configuration. [testng] [2024-12-31 00:51:01,130] [pool-1-thread-4] Initializing /data/venu/VENU_Six.TIF: [testng] 00:51:01,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:51:01,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:01,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-31_00-51-01.log] [testng] 00:51:01,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612af0c5 - End of configuration. [testng] [2024-12-31 00:51:02,168] [pool-1-thread-3] Initializing /data/venu/VENU01.IMG: [testng] 00:51:02,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:51:02,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:02,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-31_00-51-02.log] [testng] 00:51:02,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126246df - End of configuration. [testng] [2024-12-31 00:51:02,510] [pool-1-thread-2] Initializing /data/steffen/Batman_008.tif: [testng] 00:51:02,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:51:02,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:02,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-31_00-51-02.log] [testng] 00:51:02,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f26f3e1 - End of configuration. [testng] [2024-12-31 00:51:08,994] [pool-1-thread-3] Initializing /data/venu/VENU03.TIF: [testng] [2024-12-31 00:51:10,379] [pool-1-thread-8] Initializing /data/venu/VENU_Seven.TIF: [testng] [2024-12-31 00:51:16,092] [pool-1-thread-1] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] [2024-12-31 00:51:17,105] [pool-1-thread-5] Initializing /data/venu/VENU_Eight.TIF: [testng] [2024-12-31 00:51:18,347] [pool-1-thread-10] Initializing /data/venu/VENU03.IMG: [testng] [2024-12-31 00:51:18,666] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 8 seconds Finished: SUCCESS