Started by upstream project "BIOFORMATS-test-repo" build number 304
originally caused by:
Started by upstream project "Trigger" build number 326
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16558400383061550561.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48187_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 04:43:35,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:43:35,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 04:43:35,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:43:35,341 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:43:35,341 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:43:35,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:43:35,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:43:35,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:43:35,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:43:35,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:43:35,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:43:35,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:43:35,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:43:35,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:43:35,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:43:35,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:43:35,532 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:43:35,532 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:43:35,532 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:43:35,533 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:43:35,533 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 04:43:35,533 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 04:43:35,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-31 04:43:35,542] [main] java.version = 11.0.16
[testng] 04:43:35,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:43:35,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:35,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_04-43-35.log]
[testng] 04:43:35,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-31 04:43:35,589] [main] testng.directory = /data
[testng] [2024-12-31 04:43:35,589] [main] testng.configDirectory = /config
[testng] [2024-12-31 04:43:35,598] [main] testng.multiplier = 1.0
[testng] [2024-12-31 04:43:35,600] [main] testng.in-memory = false
[testng] [2024-12-31 04:43:35,600] [main] testng.allow-missing = false
[testng] [2024-12-31 04:43:35,600] [main] user.language = en
[testng] [2024-12-31 04:43:35,600] [main] user.country = ${user.country}
[testng] [2024-12-31 04:43:35,600] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-31 04:46:40,337] [main] ----------------------------------------
[testng] [2024-12-31 04:46:40,338] [main] Total files: 15735
[testng] [2024-12-31 04:46:40,338] [main] Scan time: 184.737 s (11 ms/file)
[testng] [2024-12-31 04:46:40,338] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-31 04:50:07,261] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] 04:50:07,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:50:07,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:07,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-31_04-50-07.log]
[testng] 04:50:07,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca370ce - End of configuration.
[testng] [2024-12-31 04:50:08,489] [pool-1-thread-12] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] 04:50:08,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:50:08,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:08,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-31_04-50-08.log]
[testng] 04:50:08,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc336fe - End of configuration.
[testng] [2024-12-31 04:50:09,757] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif:
[testng] 04:50:09,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:50:09,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:09,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-31_04-50-09.log]
[testng] 04:50:09,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d0d4148 - End of configuration.
[testng] [2024-12-31 04:50:11,345] [pool-1-thread-10] Initializing /data/converted/nicolas/image.tif:
[testng] 04:50:11,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:50:11,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:11,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_04-50-11.log]
[testng] 04:50:11,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437e152b - End of configuration.
[testng] [2024-12-31 04:50:12,464] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif:
[testng] 04:50:12,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:50:12,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:12,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-31_04-50-12.log]
[testng] 04:50:12,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16a87b45 - End of configuration.
[testng] [2024-12-31 04:50:13,490] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif:
[testng] 04:50:13,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:50:13,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:13,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-31_04-50-13.log]
[testng] 04:50:13,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2074ab - End of configuration.
[testng] [2024-12-31 04:50:15,137] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] 04:50:15,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:50:15,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:15,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-31_04-50-15.log]
[testng] 04:50:15,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776973f - End of configuration.
[testng] [2024-12-31 04:50:16,756] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif:
[testng] 04:50:16,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:50:16,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:16,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-31_04-50-16.log]
[testng] 04:50:16,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33849df9 - End of configuration.
[testng] [2024-12-31 04:50:18,133] [pool-1-thread-5] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] 04:50:18,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:50:18,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:18,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-31_04-50-18.log]
[testng] 04:50:18,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475a5075 - End of configuration.
[testng] [2024-12-31 04:50:19,770] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] 04:50:19,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:50:19,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:19,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-31_04-50-19.log]
[testng] 04:50:19,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cff24c9 - End of configuration.
[testng] [2024-12-31 04:50:21,270] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] 04:50:21,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:50:21,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:21,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-31_04-50-21.log]
[testng] 04:50:21,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320ad36e - End of configuration.
[testng] [2024-12-31 04:50:22,196] [pool-1-thread-2] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] 04:50:22,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:50:22,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:50:22,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-31_04-50-22.log]
[testng] 04:50:22,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e15556a - End of configuration.
[testng] [2024-12-31 04:50:49,968] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2024-12-31 04:50:51,308] [pool-1-thread-10] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-12-31 04:50:53,519] [pool-1-thread-6] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-12-31 04:50:55,424] [pool-1-thread-5] Initializing /data/converted/sebastien/F1.tif:
[testng] [2024-12-31 04:51:04,166] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-12-31 04:51:06,160] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2024-12-31 04:51:07,473] [pool-1-thread-1] Initializing /data/converted/michel/c.tif:
[testng] [2024-12-31 04:51:18,061] [pool-1-thread-8] Initializing /data/converted/lior/live+cf5b.tif:
[testng] [2024-12-31 04:51:30,963] [pool-1-thread-6] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-12-31 04:51:35,215] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-12-31 04:51:37,419] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-12-31 04:51:49,344] [pool-1-thread-1] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2024-12-31 04:52:13,000] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2024-12-31 04:52:28,025] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-12-31 04:52:45,522] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] [2024-12-31 04:53:21,541] [pool-1-thread-1] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2024-12-31 04:53:27,774] [pool-1-thread-8] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] [2024-12-31 04:54:34,382] [pool-1-thread-7] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-12-31 04:55:09,362] [pool-1-thread-5] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-12-31 04:55:32,050] [pool-1-thread-10] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-12-31 04:55:44,101] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2024-12-31 04:55:45,982] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-12-31 04:56:20,828] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-12-31 04:56:44,068] [pool-1-thread-7] Initializing /data/converted/michel/d.tif:
[testng] [2024-12-31 04:57:16,781] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] [2024-12-31 04:57:59,288] [pool-1-thread-4] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-12-31 04:58:34,903] [pool-1-thread-4] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-12-31 04:59:04,073] [pool-1-thread-3] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-12-31 04:59:26,284] [pool-1-thread-3] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-12-31 04:59:28,090] [pool-1-thread-10] Initializing /data/scott/Slide133-01.tif:
[testng] [2024-12-31 04:59:31,563] [pool-1-thread-11] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] [2024-12-31 04:59:45,469] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-12-31 04:59:52,510] [pool-1-thread-3] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2024-12-31 04:59:57,404] [pool-1-thread-10] Initializing /data/converted/michel/b.tif:
[testng] [2024-12-31 05:00:07,414] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-12-31 05:00:36,483] [pool-1-thread-10] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-12-31 05:00:58,924] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] [2024-12-31 05:02:50,035] [pool-1-thread-3] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2024-12-31 05:02:59,419] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-12-31 05:03:32,074] [pool-1-thread-12] Initializing /data/converted/converted/2chz.tif:
[testng] [2024-12-31 05:03:37,740] [pool-1-thread-3] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2024-12-31 05:03:58,622] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2024-12-31 05:07:10,755] [pool-1-thread-5] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-12-31 05:08:59,309] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-12-31 05:12:00,646] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-12-31 05:12:37,030] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] [2024-12-31 05:12:40,188] [pool-1-thread-9] Initializing /data/converted/dietmar/138.tif:
[testng] [2024-12-31 05:13:23,337] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-12-31 05:15:57,867] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-12-31 05:16:24,897] [pool-1-thread-11] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2024-12-31 05:17:58,680] [pool-1-thread-6] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-12-31 05:18:32,803] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-12-31 05:19:09,140] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2024-12-31 05:19:55,921] [pool-1-thread-7] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-12-31 05:21:48,512] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-12-31 05:24:08,316] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-12-31 05:25:38,732] [pool-1-thread-12] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2024-12-31 05:26:39,863] [pool-1-thread-12] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-12-31 05:27:31,153] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] [2024-12-31 05:27:47,053] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif:
[testng] [2024-12-31 05:28:02,365] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-12-31 05:28:12,191] [pool-1-thread-12] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2024-12-31 05:28:29,640] [pool-1-thread-2] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2024-12-31 05:28:51,791] [pool-1-thread-1] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-12-31 05:29:07,280] [pool-1-thread-8] Initializing /data/converted/michel/e.tif:
[testng] [2024-12-31 05:29:10,068] [pool-1-thread-2] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-12-31 05:29:40,799] [pool-1-thread-7] Initializing /data/othmar/mozaic.tif:
[testng] [2024-12-31 05:29:50,861] [pool-1-thread-4] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-12-31 05:30:00,750] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2024-12-31 05:30:49,587] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2024-12-31 05:31:11,250] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-12-31 05:31:18,660] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] [2024-12-31 05:32:03,149] [pool-1-thread-11] Initializing /data/converted/converted/2chzt.tif:
[testng] [2024-12-31 05:35:08,532] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-12-31 05:36:00,589] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2024-12-31 05:36:32,750] [pool-1-thread-7] Initializing /data/converted/michel/a.tif:
[testng] [2024-12-31 05:37:08,732] [pool-1-thread-9] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-12-31 05:37:19,076] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif:
[testng] [2024-12-31 05:37:58,287] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-12-31 05:40:45,587] [pool-1-thread-7] Initializing /data/converted/converted/damian.tif:
[testng] [2024-12-31 05:41:11,058] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2024-12-31 05:41:28,838] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-12-31 05:42:16,857] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-12-31 05:44:26,587] [pool-1-thread-2] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2024-12-31 05:45:39,581] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif:
[testng] [2024-12-31 05:46:33,614] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-12-31 05:47:55,240] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2024-12-31 05:48:26,580] [pool-1-thread-5] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-12-31 05:49:59,162] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-12-31 05:51:26,816] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] [2024-12-31 05:53:37,336] [pool-1-thread-3] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2024-12-31 05:56:26,996] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2024-12-31 05:56:54,154] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif:
[testng] [2024-12-31 05:57:40,702] [pool-1-thread-1] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-12-31 05:58:17,979] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-12-31 05:59:03,044] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-12-31 05:59:30,556] [pool-1-thread-6] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2024-12-31 05:59:49,178] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2024-12-31 05:59:53,761] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-12-31 06:00:49,007] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2024-12-31 06:01:09,759] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2024-12-31 06:01:17,000] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] [2024-12-31 06:01:43,360] [pool-1-thread-6] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-12-31 06:02:06,165] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-12-31 06:02:31,481] [pool-1-thread-9] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-12-31 06:02:43,611] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-12-31 06:08:48,092] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2024-12-31 06:09:30,485] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2024-12-31 06:09:49,046] [pool-1-thread-2] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-12-31 06:10:07,802] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-12-31 06:10:27,013] [pool-1-thread-2] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2024-12-31 06:13:18,307] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2024-12-31 06:13:53,213] [pool-1-thread-5] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] 07:05:33,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:05:33,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:05:33,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_07-05-33.log]
[testng] 07:05:33,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f53b959 - End of configuration.
[testng] 07:09:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:09:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:09:11,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_07-09-11.log]
[testng] 07:09:11,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b71cfa - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 145 minutes 40 seconds
Finished: SUCCESS