Started by upstream project "BIOFORMATS-test-repo" build number 304
originally caused by:
 Started by upstream project "Trigger" build number 326
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16808272183716598975.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48208_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 06:05:24,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:05:24,378 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 06:05:24,378 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:05:24,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:05:24,380 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:05:24,380 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:05:24,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:05:24,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:05:24,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:05:24,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:05:24,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:05:24,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:05:24,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:05:24,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:05:24,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:05:24,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:05:24,580 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:05:24,580 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:05:24,581 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:05:24,581 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:05:24,581 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 06:05:24,582 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 06:05:24,582 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-31 06:05:24,591] [main] java.version = 11.0.16
   [testng] 06:05:24,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:05:24,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:05:24,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_06-05-24.log]
   [testng] 06:05:24,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-12-31 06:05:24,640] [main] testng.directory = /data
   [testng] [2024-12-31 06:05:24,641] [main] testng.configDirectory = /config
   [testng] [2024-12-31 06:05:24,651] [main] testng.multiplier = 1.0
   [testng] [2024-12-31 06:05:24,652] [main] testng.in-memory = false
   [testng] [2024-12-31 06:05:24,653] [main] testng.allow-missing = false
   [testng] [2024-12-31 06:05:24,653] [main] user.language = en
   [testng] [2024-12-31 06:05:24,653] [main] user.country = ${user.country}
   [testng] [2024-12-31 06:05:24,653] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-31 06:07:45,651] [main] ----------------------------------------
   [testng] [2024-12-31 06:07:45,651] [main] Total files: 256
   [testng] [2024-12-31 06:07:45,651] [main] Scan time: 140.998 s (550 ms/file)
   [testng] [2024-12-31 06:07:45,651] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-31 06:14:45,891] [pool-1-thread-1] Initializing /data/kees/Mariaelena_d.mtb: 
   [testng] 06:14:45,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:14:45,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:45,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-31_06-14-45.log]
   [testng] 06:14:45,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5457c1 - End of configuration.
   [testng] [2024-12-31 06:14:48,750] [pool-1-thread-12] Initializing /data/viktorie/090902/090902_d.mtb: 
   [testng] 06:14:48,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:14:48,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:48,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-31_06-14-48.log]
   [testng] 06:14:48,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a92c2c - End of configuration.
   [testng] [2024-12-31 06:14:49,888] [pool-1-thread-11] Initializing /data/viktorie/2Channels.tif: 
   [testng] 06:14:49,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:14:49,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:49,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-31_06-14-49.log]
   [testng] 06:14:49,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c50f805 - End of configuration.
   [testng] [2024-12-31 06:14:52,370] [pool-1-thread-10] Initializing /data/qa-17107/example2/example2_d.mtb: 
   [testng] 06:14:52,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:14:52,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:52,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_06-14-52.log]
   [testng] 06:14:52,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20392408 - End of configuration.
   [testng] [2024-12-31 06:14:53,571] [pool-1-thread-9] Initializing /data/colin/07-06-21/07-06-21_d.mtb: 
   [testng] 06:14:53,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:14:53,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:53,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-31_06-14-53.log]
   [testng] 06:14:53,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a58e11 - End of configuration.
   [testng] [2024-12-31 06:14:55,031] [pool-1-thread-8] Initializing /data/viktorie/test/test_d.mtb: 
   [testng] 06:14:55,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:14:55,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:55,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-31_06-14-55.log]
   [testng] 06:14:55,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c07fdcb - End of configuration.
   [testng] [2024-12-31 06:14:56,018] [pool-1-thread-7] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: 
   [testng] 06:14:56,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:14:56,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:56,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-31_06-14-56.log]
   [testng] 06:14:56,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa6b9ab - End of configuration.
   [testng] [2024-12-31 06:14:57,045] [pool-1-thread-6] Initializing /data/viktorie/Structure.jpg: 
   [testng] 06:14:57,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:14:57,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:57,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-31_06-14-57.log]
   [testng] 06:14:57,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd9e9fc - End of configuration.
   [testng] [2024-12-31 06:14:57,326] [pool-1-thread-5] Initializing /data/qa-17107/plain/Plain_d.mtb: 
   [testng] 06:14:57,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:14:57,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:57,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-31_06-14-57.log]
   [testng] 06:14:57,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4691fbbf - End of configuration.
   [testng] [2024-12-31 06:14:58,543] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: 
   [testng] 06:14:58,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:14:58,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:14:58,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-31_06-14-58.log]
   [testng] 06:14:58,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@760899b6 - End of configuration.
   [testng] [2024-12-31 06:15:00,042] [pool-1-thread-3] Initializing /data/clare/set_27_on_d.mtb: 
   [testng] 06:15:00,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:15:00,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:15:00,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-31_06-15-00.log]
   [testng] 06:15:00,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b108809 - End of configuration.
   [testng] [2024-12-31 06:15:02,003] [pool-1-thread-2] Initializing /data/colin/08-10-09/08-10-09_d.mtb: 
   [testng] 06:15:02,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:15:02,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:15:02,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-31_06-15-02.log]
   [testng] 06:15:02,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e95fcd - End of configuration.
   [testng] [2024-12-31 06:15:14,205] [pool-1-thread-6] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 12 minutes 37 seconds
Finished: SUCCESS