Started by upstream project "BIOFORMATS-test-repo" build number 305
originally caused by:
Started by upstream project "Trigger" build number 327
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17562355722270344408.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48239_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:36:21,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:36:21,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:36:21,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:21,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:21,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:36:21,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:36:21,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:36:21,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:21,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:21,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:36:21,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:36:21,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:36:22,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:36:22,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:36:22,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:36:22,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:36:22,094 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:36:22,094 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:36:22,094 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:36:22,094 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:36:22,095 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:36:22,095 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:36:22,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-01 00:36:22,104] [main] java.version = 17.0.2
[testng] 00:36:22,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:36:22,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:22,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_00-36-22.log]
[testng] 00:36:22,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-01 00:36:22,149] [main] testng.directory = /data
[testng] [2025-01-01 00:36:22,149] [main] testng.configDirectory = /config
[testng] [2025-01-01 00:36:22,157] [main] testng.multiplier = 1.0
[testng] [2025-01-01 00:36:22,158] [main] testng.in-memory = false
[testng] [2025-01-01 00:36:22,158] [main] testng.allow-missing = false
[testng] [2025-01-01 00:36:22,158] [main] user.language = en
[testng] [2025-01-01 00:36:22,158] [main] user.country = ${user.country}
[testng] [2025-01-01 00:36:22,158] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-01 00:36:48,035] [main] ----------------------------------------
[testng] [2025-01-01 00:36:48,035] [main] Total files: 21
[testng] [2025-01-01 00:36:48,035] [main] Scan time: 25.876 s (1232 ms/file)
[testng] [2025-01-01 00:36:48,036] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-01 00:37:29,593] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt:
[testng] 00:37:29,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:37:29,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:29,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_00-37-29.log]
[testng] 00:37:29,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5616d249 - End of configuration.
[testng] [2025-01-01 00:37:30,589] [pool-1-thread-12] Initializing /data/stefan/001_q17.txt:
[testng] 00:37:30,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:37:30,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:30,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_00-37-30.log]
[testng] 00:37:30,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b4b1630 - End of configuration.
[testng] [2025-01-01 00:37:32,110] [pool-1-thread-11] Initializing /data/stefan/001_q16.txt:
[testng] 00:37:32,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:37:32,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:32,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_00-37-32.log]
[testng] 00:37:32,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dcd8430 - End of configuration.
[testng] [2025-01-01 00:37:33,480] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt:
[testng] 00:37:33,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:37:33,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:33,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_00-37-33.log]
[testng] 00:37:33,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153d4e81 - End of configuration.
[testng] [2025-01-01 00:37:35,601] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt:
[testng] 00:37:35,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:37:35,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:35,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_00-37-35.log]
[testng] 00:37:35,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28213936 - End of configuration.
[testng] [2025-01-01 00:37:38,920] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt:
[testng] 00:37:38,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:37:38,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:38,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_00-37-38.log]
[testng] 00:37:38,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60fde3df - End of configuration.
[testng] [2025-01-01 00:37:40,527] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 00:37:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:37:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:40,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_00-37-40.log]
[testng] 00:37:40,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@465615aa - End of configuration.
[testng] [2025-01-01 00:37:42,130] [pool-1-thread-6] Initializing /data/stefan/001_q07.txt:
[testng] 00:37:42,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:37:42,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:42,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_00-37-42.log]
[testng] 00:37:42,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ef6910 - End of configuration.
[testng] [2025-01-01 00:37:46,969] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 00:37:46,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:37:46,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:46,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_00-37-46.log]
[testng] 00:37:46,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1747ff31 - End of configuration.
[testng] [2025-01-01 00:37:52,121] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt:
[testng] 00:37:52,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:37:52,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:52,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_00-37-52.log]
[testng] 00:37:52,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc0c9a - End of configuration.
[testng] [2025-01-01 00:37:55,412] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt:
[testng] 00:37:55,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:37:55,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:55,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_00-37-55.log]
[testng] 00:37:55,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c0d9a2 - End of configuration.
[testng] [2025-01-01 00:37:57,217] [pool-1-thread-2] Initializing /data/stefan/001_q14.txt:
[testng] 00:37:57,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:37:57,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:57,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_00-37-57.log]
[testng] 00:37:57,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7980fa1e - End of configuration.
[testng] [2025-01-01 00:38:19,533] [pool-1-thread-7] Initializing /data/stefan/001_q05.txt:
[testng] [2025-01-01 00:38:22,160] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt:
[testng] [2025-01-01 00:38:23,437] [pool-1-thread-3] Initializing /data/stefan/001_q03.txt:
[testng] [2025-01-01 00:38:25,098] [pool-1-thread-12] Initializing /data/stefan/001_q02.txt:
[testng] [2025-01-01 00:38:26,805] [pool-1-thread-1] Initializing /data/stefan/001_q11.txt:
[testng] [2025-01-01 00:38:28,544] [pool-1-thread-2] Initializing /data/stefan/001_q18.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 41 seconds
Finished: SUCCESS