Started by upstream project "BIOFORMATS-test-repo" build number 305 originally caused by: Started by upstream project "Trigger" build number 327 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13467466587405348597.sh + '[' ome-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48284_merge_ci -v /uod/idr/repos/curated/ome-tiff:/data -v /uod/idr-scratch/merge-ci/curated/ome-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:18:20,574 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:18:20,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:18:20,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:20,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:20,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:18:20,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:18:20,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:18:20,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:20,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:20,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:18:20,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:18:20,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:18:20,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:18:20,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:18:20,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:18:20,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:18:20,798 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:18:20,798 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:18:20,798 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:18:20,799 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:18:20,799 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:18:20,800 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:18:20,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-01 01:18:20,810] [main] java.version = 17.0.2 [testng] 01:18:20,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:18:20,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:20,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_01-18-20.log] [testng] 01:18:20,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-01 01:18:20,864] [main] testng.directory = /data [testng] [2025-01-01 01:18:20,864] [main] testng.configDirectory = /config [testng] [2025-01-01 01:18:20,874] [main] testng.multiplier = 1.0 [testng] [2025-01-01 01:18:20,875] [main] testng.in-memory = false [testng] [2025-01-01 01:18:20,875] [main] testng.allow-missing = false [testng] [2025-01-01 01:18:20,875] [main] user.language = en [testng] [2025-01-01 01:18:20,875] [main] user.country = ${user.country} [testng] [2025-01-01 01:18:20,875] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-01 01:22:43,449] [main] ---------------------------------------- [testng] [2025-01-01 01:22:43,449] [main] Total files: 4771 [testng] [2025-01-01 01:22:43,449] [main] Scan time: 262.574 s (55 ms/file) [testng] [2025-01-01 01:22:43,449] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 1455 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-01 02:00:44,843] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y00/image--L02--S00--U00--V00--J00--X00--Y00--T02--Z00--C00.ome.tif: [testng] 02:00:44,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:00:44,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:44,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_02-00-44.log] [testng] 02:00:44,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dbe468 - End of configuration. [testng] [2025-01-01 02:00:45,441] [pool-1-thread-12] Initializing /data/andor/iQMM_FURA_TIME177_WAVELENGTH1_0.ome.tif: [testng] 02:00:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:00:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:45,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_02-00-45.log] [testng] 02:00:45,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63108371 - End of configuration. [testng] [2025-01-01 02:00:45,895] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME101_WAVELENGTH1_0.ome.tif: [testng] 02:00:45,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:00:45,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:45,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_02-00-45.log] [testng] 02:00:45,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6bb4e5 - End of configuration. [testng] [2025-01-01 02:00:46,310] [pool-1-thread-10] Initializing /data/tubhiswtTEST/tubhiswt4D.ome.tif: [testng] 02:00:46,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:00:46,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:46,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_02-00-46.log] [testng] 02:00:46,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c76e8e2 - End of configuration. [testng] [2025-01-01 02:00:46,847] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y01/image--L05--S00--U00--V00--J00--X04--Y01--T05--Z00--C00.ome.tif: [testng] 02:00:46,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:00:46,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:46,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_02-00-46.log] [testng] 02:00:46,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71d02630 - End of configuration. [testng] [2025-01-01 02:00:47,285] [pool-1-thread-8] Initializing /data/chris/Fig3/Fig 3B.ome.tiff: [testng] 02:00:47,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:00:47,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:47,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_02-00-47.log] [testng] 02:00:47,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@731bf905 - End of configuration. [testng] [2025-01-01 02:00:47,730] [pool-1-thread-7] Initializing /data/peter/LA_ProtocolCombination_23.01.2012_16_29_52_1.ome.tif: [testng] 02:00:47,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:00:47,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:47,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_02-00-47.log] [testng] 02:00:47,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c76fcc9 - End of configuration. [testng] [2025-01-01 02:00:48,470] [pool-1-thread-6] Initializing /data/martin/WTCFTR1-test.ome.tif: [testng] 02:00:48,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:00:48,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:48,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_02-00-48.log] [testng] 02:00:48,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b5dcf3a - End of configuration. [testng] [2025-01-01 02:00:49,117] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y02/image--L06--S00--U00--V00--J00--X01--Y02--T06--Z00--C00.ome.tif: [testng] 02:00:49,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:00:49,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:49,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_02-00-49.log] [testng] 02:00:49,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@707d9da2 - End of configuration. [testng] [2025-01-01 02:00:49,798] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y06/image--L13--S00--U00--V00--J00--X04--Y06--T13--Z00--C00.ome.tif: [testng] 02:00:49,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:00:49,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:49,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_02-00-49.log] [testng] 02:00:49,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6d627f - End of configuration. [testng] [2025-01-01 02:00:50,284] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y06/image--L04--S00--U00--V00--J00--X02--Y06--T04--Z00--C00.ome.tif: [testng] 02:00:50,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:00:50,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:50,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_02-00-50.log] [testng] 02:00:50,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ece0043 - End of configuration. [testng] [2025-01-01 02:00:50,711] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y06/image--L11--S00--U00--V00--J00--X02--Y06--T11--Z00--C00.ome.tif: [testng] 02:00:50,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:00:50,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:50,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_02-00-50.log] [testng] 02:00:50,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22f30c75 - End of configuration. [testng] [2025-01-01 02:00:57,119] [pool-1-thread-8] Initializing /data/oliver/LA_ProtocolCombination_12.10.2009_21_40_58_Marker_1__3 3.tif: [testng] [2025-01-01 02:01:04,347] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME68_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:05,730] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME189_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:01:10,009] [pool-1-thread-4] Initializing /data/public/2011-06/companion/multifile.companion.ome: [testng] [2025-01-01 02:01:11,687] [pool-1-thread-7] Initializing /data/sub-resolution/Leica-2/Leica-2-subifds.ome.tiff: [testng] [2025-01-01 02:01:13,179] [pool-1-thread-9] Initializing /data/andor/iQMM_FURA_TIME155_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:14,138] [pool-1-thread-5] Initializing /data/ruben/Test_Ruben_001/Test_Ruben_001--W0001--P001--Z001--C01--T00001.ome.tif: [testng] [2025-01-01 02:01:23,703] [pool-1-thread-1] Initializing /data/andor/iQMM_FURA_TIME149_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:25,535] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L06--S00--U00--V00--J00--X06--Y04--T06--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:27,106] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y03/image--L11--S00--U00--V00--J00--X06--Y03--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:28,727] [pool-1-thread-12] Initializing /data/andor/iQMM_FURA_TIME104_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:30,153] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME182_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:39,224] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME181_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:39,949] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L11--S00--U00--V00--J00--X03--Y02--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:41,812] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L10--S00--U00--V00--J00--X00--Y01--T10--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:42,500] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y04/image--L04--S00--U00--V00--J00--X05--Y04--T04--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:43,934] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y06/image--L08--S00--U00--V00--J00--X02--Y06--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:45,501] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L08--S00--U00--V00--J00--X03--Y02--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:46,375] [pool-1-thread-11] Initializing /data/prairie/TSeries-12062007-1400-093/TSeries-12062007-1400-093.xml: [testng] [2025-01-01 02:01:47,095] [pool-1-thread-1] Initializing /data/andor/iQMM_FURA_TIME184_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:01:48,962] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y06/image--L03--S00--U00--V00--J00--X02--Y06--T03--Z00--C00.ome.tif: [testng] [2025-01-01 02:01:52,947] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME1_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:01:54,471] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y06/image--L12--S00--U00--V00--J00--X01--Y06--T12--Z00--C00.ome.tif: [testng] [2025-01-01 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Initializing /data/andor/iQMM_FURA_TIME30_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:03:56,004] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y04/image--L09--S00--U00--V00--J00--X00--Y04--T09--Z00--C00.ome.tif: [testng] [2025-01-01 02:03:56,476] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y06/image--L01--S00--U00--V00--J00--X04--Y06--T01--Z00--C00.ome.tif: [testng] [2025-01-01 02:03:58,572] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y02/image--L11--S00--U00--V00--J00--X02--Y02--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:03:59,200] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y01/image--L11--S00--U00--V00--J00--X04--Y01--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:02,090] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L08--S00--U00--V00--J00--X06--Y04--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:02,701] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L14--S00--U00--V00--J00--X00--Y01--T14--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:03,362] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L11--S00--U00--V00--J00--X06--Y04--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:03,858] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y06/image--L11--S00--U00--V00--J00--X06--Y06--T11--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:04,472] [pool-1-thread-4] Initializing /data/andor/iQMM_FURA_TIME167_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:04:05,211] [pool-1-thread-7] Initializing /data/andor/iQMM_FURA_TIME19_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:04:05,702] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME8_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:04:06,151] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME18_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:04:10,585] [pool-1-thread-2] Initializing /data/public/2009-09/two-screens-two-plates-four-wells.ome.tiff: [testng] [2025-01-01 02:04:11,533] [pool-1-thread-3] Initializing /data/andor/iQMM_FURA_TIME17_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:04:14,821] [pool-1-thread-1] Initializing /data/public/2010-04/instrument.ome.tiff: [testng] [2025-01-01 02:04:15,478] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y00/image--L02--S00--U00--V00--J00--X01--Y00--T02--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:16,256] [pool-1-thread-12] Initializing /data/andor/iQMM_FURA_TIME3_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:04:16,755] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y04/image--L08--S00--U00--V00--J00--X02--Y04--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:17,293] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y00/image--L15--S00--U00--V00--J00--X00--Y00--T15--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:17,815] [pool-1-thread-11] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y02/image--L08--S00--U00--V00--J00--X00--Y02--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:19,362] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y00/image--L06--S00--U00--V00--J00--X02--Y00--T06--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:19,847] [pool-1-thread-4] Initializing 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[testng] [2025-01-01 02:04:50,861] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y04/image--L04--S00--U00--V00--J00--X04--Y04--T04--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:51,403] [pool-1-thread-2] Initializing /data/oliver/LA_ProtocolCombination_12.10.2009_20_55_46_Marker__1 2.tif: [testng] [2025-01-01 02:04:52,374] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y02/image--L07--S00--U00--V00--J00--X01--Y02--T07--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:52,760] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME51_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:04:53,160] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y06/image--L10--S00--U00--V00--J00--X00--Y06--T10--Z00--C00.ome.tif: [testng] [2025-01-01 02:04:55,487] [pool-1-thread-8] Initializing 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Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y01/image--L09--S00--U00--V00--J00--X04--Y01--T09--Z00--C00.ome.tif: [testng] [2025-01-01 02:05:14,486] [pool-1-thread-2] Initializing /data/andor/iQMM_FURA_TIME31_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:05:14,994] [pool-1-thread-11] Initializing /data/andor/iQMM_FURA_TIME33_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:05:15,495] [pool-1-thread-10] Initializing /data/public/2013-06/bioformats-artificial/multi-channel-z-series.ome.tif: [testng] [2025-01-01 02:05:16,011] [pool-1-thread-3] Initializing /data/andor/iQMM_FURA_TIME184_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:05:16,936] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y05/image--L08--S00--U00--V00--J00--X02--Y05--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:05:18,844] [pool-1-thread-6] Initializing 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/data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y06/image--L02--S00--U00--V00--J00--X00--Y06--T02--Z00--C00.ome.tif: [testng] [2025-01-01 02:55:43,471] [pool-1-thread-2] Initializing /data/chris/Fig1/Fig 1C-1hr.ome.tiff: [testng] [2025-01-01 02:55:45,653] [pool-1-thread-6] Initializing /data/chris/Fig5/Fig 5A.ome.tiff: [testng] [2025-01-01 02:55:47,004] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y05/image--L02--S00--U00--V00--J00--X01--Y05--T02--Z00--C00.ome.tif: [testng] [2025-01-01 02:55:48,540] [pool-1-thread-2] Initializing /data/andor/iQMM_FURA_TIME191_WAVELENGTH1_0.ome.tif: [testng] [2025-01-01 02:55:49,078] [pool-1-thread-8] Initializing /data/public/2013-06/bioformats-artificial/4D-series.ome.tif: [testng] [2025-01-01 02:55:49,634] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L08--S00--U00--V00--J00--X02--Y01--T08--Z00--C00.ome.tif: [testng] [2025-01-01 02:55:52,162] [pool-1-thread-6] Initializing /data/chris/Fig1/Fig 1C-1min.ome.tiff: [testng] [2025-01-01 02:55:54,153] [pool-1-thread-12] Initializing /data/curtis/multi-channel.ome.tif: [testng] [2025-01-01 02:55:54,767] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y05/image--L07--S00--U00--V00--J00--X03--Y05--T07--Z00--C00.ome.tif: [testng] [2025-01-01 02:55:57,373] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L14--S00--U00--V00--J00--X06--Y04--T14--Z00--C00.ome.tif: [testng] [2025-01-01 02:55:57,956] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME126_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:55:58,612] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L07--S00--U00--V00--J00--X03--Y02--T07--Z00--C00.ome.tif: [testng] [2025-01-01 02:56:00,457] [pool-1-thread-12] Initializing /data/andor/iQMM_FURA_TIME175_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:56:02,357] [pool-1-thread-8] Initializing /data/dominik/2009_09_11__14_26_33h__channel01.tif: [testng] [2025-01-01 02:56:05,003] [pool-1-thread-5] Initializing /data/chris/Fig1/Fig 1B-1min.ome.tiff: [testng] [2025-01-01 02:56:05,607] [pool-1-thread-2] Initializing /data/public/2016-06/tubhiswt-2D/tubhiswt_C0.ome.tif: [testng] [2025-01-01 02:56:06,821] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME95_WAVELENGTH0_0.ome.tif: [testng] [2025-01-01 02:56:09,980] [pool-1-thread-12] Initializing /data/public/2008-09/z-series.ome.tiff: [testng] 03:51:39,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:51:39,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:39,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_03-51-39.log] [testng] 03:51:39,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef7fb5e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 77115, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 153 minutes 21 seconds Finished: SUCCESS