Started by upstream project "BIOFORMATS-test-repo" build number 305
originally caused by:
 Started by upstream project "Trigger" build number 327
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7032627311019856584.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48340_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:13:28,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:13:28,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 03:13:28,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:13:28,471 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:13:28,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:13:28,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:13:28,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:13:28,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:13:28,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:13:28,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:13:28,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:13:28,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:13:28,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:13:28,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:13:28,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:13:28,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:13:28,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:13:28,671 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:13:28,671 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:13:28,671 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:13:28,671 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 03:13:28,672 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 03:13:28,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-01 03:13:28,681] [main] java.version = 17.0.2
   [testng] 03:13:28,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:13:28,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:13:28,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_03-13-28.log]
   [testng] 03:13:28,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2025-01-01 03:13:28,731] [main] testng.directory = /data
   [testng] [2025-01-01 03:13:28,731] [main] testng.configDirectory = /config
   [testng] [2025-01-01 03:13:28,739] [main] testng.multiplier = 1.0
   [testng] [2025-01-01 03:13:28,740] [main] testng.in-memory = false
   [testng] [2025-01-01 03:13:28,740] [main] testng.allow-missing = false
   [testng] [2025-01-01 03:13:28,740] [main] user.language = en
   [testng] [2025-01-01 03:13:28,741] [main] user.country = ${user.country}
   [testng] [2025-01-01 03:13:28,741] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-01 03:13:57,481] [main] ----------------------------------------
   [testng] [2025-01-01 03:13:57,481] [main] Total files: 73
   [testng] [2025-01-01 03:13:57,481] [main] Scan time: 28.74 s (393 ms/file)
   [testng] [2025-01-01 03:13:57,482] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 63 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-01 03:14:31,822] [pool-1-thread-1] Initializing /data/generated/mri-stack-original.ims: 
   [testng] 03:14:31,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:14:31,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:31,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_03-14-31.log]
   [testng] 03:14:31,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebad1e - End of configuration.
   [testng] [2025-01-01 03:14:31,929] [pool-1-thread-12] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims: 
   [testng] 03:14:31,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:14:31,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:31,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_03-14-31.log]
   [testng] 03:14:31,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66fa26cd - End of configuration.
   [testng] [2025-01-01 03:14:32,322] [pool-1-thread-11] Initializing /data/jason/imaris_5_5_demoimages/PlantCell.ims: 
   [testng] 03:14:32,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:14:32,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:32,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_03-14-32.log]
   [testng] 03:14:32,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43675c6d - End of configuration.
   [testng] [2025-01-01 03:14:32,662] [pool-1-thread-10] Initializing /data/jake/p75Cherry M2 010-3~B.ims: 
   [testng] 03:14:32,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:14:32,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:32,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_03-14-32.log]
   [testng] 03:14:32,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60bec4a3 - End of configuration.
   [testng] [2025-01-01 03:14:32,998] [pool-1-thread-9] Initializing /data/qa-17522/2016-12-14_08.43.34_Sample Prefix_WAINWRIGHT James_Protocol.ims: 
   [testng] 03:14:32,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:14:32,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:32,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_03-14-32.log]
   [testng] 03:14:33,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4783589 - End of configuration.
   [testng] [2025-01-01 03:14:38,588] [pool-1-thread-8] Initializing /data/niko/imaris-testfile_5x5x5.ims: 
   [testng] 03:14:38,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:14:38,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:38,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_03-14-38.log]
   [testng] 03:14:38,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2778d29 - End of configuration.
   [testng] [2025-01-01 03:14:38,783] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0004.ims: 
   [testng] 03:14:38,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:14:38,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:38,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_03-14-38.log]
   [testng] 03:14:38,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cd086a3 - End of configuration.
   [testng] [2025-01-01 03:14:38,867] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0013.ims: 
   [testng] 03:14:38,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:14:38,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:38,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_03-14-38.log]
   [testng] 03:14:38,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d087038 - End of configuration.
   [testng] [2025-01-01 03:14:38,955] [pool-1-thread-5] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal.ims: 
   [testng] 03:14:38,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:14:38,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:38,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_03-14-38.log]
   [testng] 03:14:38,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33cdf557 - End of configuration.
   [testng] [2025-01-01 03:14:39,141] [pool-1-thread-4] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: 
   [testng] 03:14:39,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:14:39,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:39,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_03-14-39.log]
   [testng] 03:14:39,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d88d7b2 - End of configuration.
   [testng] [2025-01-01 03:14:39,361] [pool-1-thread-3] Initializing /data/public/eliana/retina_large.ims: 
   [testng] 03:14:39,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:14:39,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:39,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_03-14-39.log]
   [testng] 03:14:39,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69efe37b - End of configuration.
   [testng] [2025-01-01 03:14:39,584] [pool-1-thread-2] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: 
   [testng] 03:14:39,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:14:39,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:14:39,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_03-14-39.log]
   [testng] 03:14:39,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f968f57 - End of configuration.
   [testng] [2025-01-01 03:14:44,031] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_1T_confocal_IMS3.ims: 

BUILD SUCCESSFUL
Total time: 3 minutes 1 second
Finished: SUCCESS