Started by upstream project "BIOFORMATS-test-repo" build number 305
originally caused by:
Started by upstream project "Trigger" build number 327
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1716332655504599817.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48369_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:22:57,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:22:57,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 04:22:57,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:22:57,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:22:57,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:22:57,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:22:57,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:22:57,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:22:57,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:22:57,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:22:57,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:22:57,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:22:57,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:22:57,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:22:57,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:22:57,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:22:57,899 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:22:57,899 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:22:57,899 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:22:57,899 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:22:57,899 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 04:22:57,900 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 04:22:57,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-01 04:22:57,908] [main] java.version = 17.0.2
[testng] 04:22:57,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:22:57,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:22:57,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_04-22-57.log]
[testng] 04:22:57,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-01 04:22:57,954] [main] testng.directory = /data
[testng] [2025-01-01 04:22:57,954] [main] testng.configDirectory = /config
[testng] [2025-01-01 04:22:57,962] [main] testng.multiplier = 1.0
[testng] [2025-01-01 04:22:57,963] [main] testng.in-memory = false
[testng] [2025-01-01 04:22:57,963] [main] testng.allow-missing = false
[testng] [2025-01-01 04:22:57,963] [main] user.language = en
[testng] [2025-01-01 04:22:57,963] [main] user.country = ${user.country}
[testng] [2025-01-01 04:22:57,963] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-01 04:23:00,341] [main] ----------------------------------------
[testng] [2025-01-01 04:23:00,341] [main] Total files: 11
[testng] [2025-01-01 04:23:00,342] [main] Scan time: 2.378 s (216 ms/file)
[testng] [2025-01-01 04:23:00,342] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-01 04:23:14,660] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 04:23:14,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:23:14,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:14,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_04-23-14.log]
[testng] 04:23:14,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121b3c2 - End of configuration.
[testng] [2025-01-01 04:23:16,685] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 04:23:16,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:23:16,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:16,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_04-23-16.log]
[testng] 04:23:16,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a31edc - End of configuration.
[testng] [2025-01-01 04:23:18,921] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 04:23:18,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:23:18,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:18,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_04-23-18.log]
[testng] 04:23:18,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c769929 - End of configuration.
[testng] [2025-01-01 04:23:18,992] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 04:23:18,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:23:18,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:18,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_04-23-18.log]
[testng] 04:23:18,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c45eef0 - End of configuration.
[testng] [2025-01-01 04:23:20,591] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 04:23:20,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:23:20,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:20,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_04-23-20.log]
[testng] 04:23:20,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aba8227 - End of configuration.
[testng] [2025-01-01 04:23:21,700] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 04:23:21,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:23:21,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:21,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_04-23-21.log]
[testng] 04:23:21,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@472e3daa - End of configuration.
[testng] [2025-01-01 04:23:21,963] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 04:23:21,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:23:21,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:21,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_04-23-21.log]
[testng] 04:23:21,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70793d60 - End of configuration.
[testng] [2025-01-01 04:23:23,787] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 04:23:23,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:23:23,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:23,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_04-23-23.log]
[testng] 04:23:23,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28bc6d58 - End of configuration.
[testng] [2025-01-01 04:23:24,051] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 04:23:24,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:23:24,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:24,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_04-23-24.log]
[testng] 04:23:24,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ad5fde3 - End of configuration.
[testng] [2025-01-01 04:23:25,169] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 04:23:25,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:23:25,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:25,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_04-23-25.log]
[testng] 04:23:25,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a9cc317 - End of configuration.
[testng] [2025-01-01 04:23:27,477] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 04:23:27,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:23:27,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:27,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_04-23-27.log]
[testng] 04:23:27,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76f02583 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 seconds
Finished: SUCCESS