Started by upstream project "BIOFORMATS-test-repo" build number 306
originally caused by:
Started by upstream project "Trigger" build number 328
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14066872204387533765.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48403_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:38:51,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:38:51,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:38:51,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:38:51,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:38:51,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:38:51,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:38:51,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:38:51,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:38:51,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:38:51,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:38:51,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:38:51,209 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:38:51,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:38:51,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:38:51,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:38:51,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:38:51,387 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:38:51,387 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:38:51,387 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:38:51,387 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:38:51,387 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:38:51,388 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:38:51,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-02 00:38:51,397] [main] java.version = 21
[testng] 00:38:51,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:38:51,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:51,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_00-38-51.log]
[testng] 00:38:51,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2025-01-02 00:38:51,441] [main] testng.directory = /data
[testng] [2025-01-02 00:38:51,442] [main] testng.configDirectory = /config
[testng] [2025-01-02 00:38:51,450] [main] testng.multiplier = 1.0
[testng] [2025-01-02 00:38:51,450] [main] testng.in-memory = false
[testng] [2025-01-02 00:38:51,451] [main] testng.allow-missing = false
[testng] [2025-01-02 00:38:51,451] [main] user.language = en
[testng] [2025-01-02 00:38:51,451] [main] user.country = ${user.country}
[testng] [2025-01-02 00:38:51,451] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-02 00:38:51,916] [main] ----------------------------------------
[testng] [2025-01-02 00:38:51,916] [main] Total files: 21
[testng] [2025-01-02 00:38:51,916] [main] Scan time: 0.465 s (22 ms/file)
[testng] [2025-01-02 00:38:51,916] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-02 00:38:57,258] [pool-1-thread-1] Initializing /data/venu/Kontrolle0005.lim:
[testng] 00:38:57,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:38:57,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_00-38-57.log]
[testng] 00:38:57,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6184a4f3 - End of configuration.
[testng] [2025-01-02 00:38:57,627] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim:
[testng] 00:38:57,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:38:57,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_00-38-57.log]
[testng] 00:38:57,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6647ca85 - End of configuration.
[testng] [2025-01-02 00:38:57,985] [pool-1-thread-11] Initializing /data/venu/Kontrolle0014.lim:
[testng] 00:38:57,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:38:57,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_00-38-57.log]
[testng] 00:38:57,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d865230 - End of configuration.
[testng] [2025-01-02 00:38:58,339] [pool-1-thread-10] Initializing /data/venu/Kontrolle0003.lim:
[testng] 00:38:58,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:38:58,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:58,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_00-38-58.log]
[testng] 00:38:58,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a645f2b - End of configuration.
[testng] [2025-01-02 00:38:58,673] [pool-1-thread-9] Initializing /data/venu/Kontrolle0010.lim:
[testng] 00:38:58,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:38:58,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:58,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_00-38-58.log]
[testng] 00:38:58,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration.
[testng] [2025-01-02 00:38:58,953] [pool-1-thread-8] Initializing /data/venu/Kontrolle0019.lim:
[testng] 00:38:58,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:38:58,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:58,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_00-38-58.log]
[testng] 00:38:58,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5f9514 - End of configuration.
[testng] [2025-01-02 00:38:59,339] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim:
[testng] 00:38:59,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:38:59,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:59,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_00-38-59.log]
[testng] 00:38:59,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ec08d04 - End of configuration.
[testng] [2025-01-02 00:38:59,675] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim:
[testng] 00:38:59,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:38:59,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:59,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_00-38-59.log]
[testng] 00:38:59,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ead2317 - End of configuration.
[testng] [2025-01-02 00:39:00,027] [pool-1-thread-5] Initializing /data/venu/Kontrolle0018.lim:
[testng] 00:39:00,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:39:00,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:00,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_00-39-00.log]
[testng] 00:39:00,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b643da - End of configuration.
[testng] [2025-01-02 00:39:00,324] [pool-1-thread-4] Initializing /data/venu/Kontrolle0016.lim:
[testng] 00:39:00,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:39:00,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:00,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_00-39-00.log]
[testng] 00:39:00,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8e1d55 - End of configuration.
[testng] [2025-01-02 00:39:00,653] [pool-1-thread-3] Initializing /data/venu/Kontrolle0020.lim:
[testng] 00:39:00,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:39:00,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:00,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_00-39-00.log]
[testng] 00:39:00,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2389ec92 - End of configuration.
[testng] [2025-01-02 00:39:00,860] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim:
[testng] 00:39:00,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:39:00,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:00,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_00-39-00.log]
[testng] 00:39:00,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c414e92 - End of configuration.
[testng] [2025-01-02 00:39:06,414] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim:
[testng] [2025-01-02 00:39:08,442] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim:
[testng] [2025-01-02 00:39:10,372] [pool-1-thread-2] Initializing /data/venu/Kontrolle0004.lim:
[testng] [2025-01-02 00:39:10,864] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2025-01-02 00:39:11,370] [pool-1-thread-6] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2025-01-02 00:39:11,852] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim:
[testng] [2025-01-02 00:39:12,342] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2025-01-02 00:39:12,828] [pool-1-thread-1] Initializing /data/venu/Kontrolle0012.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS