Started by upstream project "BIOFORMATS-test-repo" build number 306
originally caused by:
Started by upstream project "Trigger" build number 328
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10128532892747500860.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48426_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:53:56,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:53:56,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:53:56,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:56,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:56,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:53:56,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:53:56,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:53:56,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:56,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:56,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:53:56,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:53:56,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:53:56,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:53:56,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:53:56,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:53:56,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:53:56,814 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:53:56,815 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:53:56,815 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:53:56,815 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:53:56,816 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:53:56,816 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:53:56,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-02 00:53:56,826] [main] java.version = 21
[testng] 00:53:56,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:53:56,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:56,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_00-53-56.log]
[testng] 00:53:56,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2025-01-02 00:53:56,874] [main] testng.directory = /data
[testng] [2025-01-02 00:53:56,874] [main] testng.configDirectory = /config
[testng] [2025-01-02 00:53:56,882] [main] testng.multiplier = 1.0
[testng] [2025-01-02 00:53:56,883] [main] testng.in-memory = false
[testng] [2025-01-02 00:53:56,883] [main] testng.allow-missing = false
[testng] [2025-01-02 00:53:56,883] [main] user.language = en
[testng] [2025-01-02 00:53:56,883] [main] user.country = ${user.country}
[testng] [2025-01-02 00:53:56,883] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-02 00:53:57,597] [main] ----------------------------------------
[testng] [2025-01-02 00:53:57,597] [main] Total files: 21
[testng] [2025-01-02 00:53:57,597] [main] Scan time: 0.713 s (33 ms/file)
[testng] [2025-01-02 00:53:57,598] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-02 00:54:06,996] [pool-1-thread-1] Initializing /data/samples/FLAG_T16.TGA:
[testng] 00:54:06,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:54:06,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:06,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_00-54-06.log]
[testng] 00:54:06,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b30fa01 - End of configuration.
[testng] [2025-01-02 00:54:07,478] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 00:54:07,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:54:07,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:07,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_00-54-07.log]
[testng] 00:54:07,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e014ce - End of configuration.
[testng] [2025-01-02 00:54:07,919] [pool-1-thread-11] Initializing /data/samples/XING_T16.TGA:
[testng] 00:54:07,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:54:07,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:07,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_00-54-07.log]
[testng] 00:54:07,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29c3a9dd - End of configuration.
[testng] [2025-01-02 00:54:08,342] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA:
[testng] 00:54:08,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:54:08,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:08,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_00-54-08.log]
[testng] 00:54:08,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629bcc5b - End of configuration.
[testng] [2025-01-02 00:54:08,814] [pool-1-thread-9] Initializing /data/samples/CTC24.TGA:
[testng] 00:54:08,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:54:08,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:08,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_00-54-08.log]
[testng] 00:54:08,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5ee39c - End of configuration.
[testng] [2025-01-02 00:54:09,248] [pool-1-thread-8] Initializing /data/samples/XING_T24.TGA:
[testng] 00:54:09,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:54:09,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:09,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_00-54-09.log]
[testng] 00:54:09,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8ecd7a - End of configuration.
[testng] [2025-01-02 00:54:09,630] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA:
[testng] 00:54:09,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:54:09,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:09,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_00-54-09.log]
[testng] 00:54:09,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e26149a - End of configuration.
[testng] [2025-01-02 00:54:09,920] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 00:54:09,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:54:09,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:09,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_00-54-09.log]
[testng] 00:54:09,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5a5bd4 - End of configuration.
[testng] [2025-01-02 00:54:10,212] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] 00:54:10,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:54:10,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:10,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_00-54-10.log]
[testng] 00:54:10,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2367fac4 - End of configuration.
[testng] [2025-01-02 00:54:10,554] [pool-1-thread-4] Initializing /data/samples/UTC16.TGA:
[testng] 00:54:10,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:54:10,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:10,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_00-54-10.log]
[testng] 00:54:10,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc0ef37 - End of configuration.
[testng] [2025-01-02 00:54:10,890] [pool-1-thread-3] Initializing /data/samples/UCM8.TGA:
[testng] 00:54:10,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:54:10,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:10,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_00-54-10.log]
[testng] 00:54:10,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d30184 - End of configuration.
[testng] [2025-01-02 00:54:11,192] [pool-1-thread-2] Initializing /data/samples/XING_B32.TGA:
[testng] 00:54:11,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:54:11,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:11,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_00-54-11.log]
[testng] 00:54:11,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44998faf - End of configuration.
[testng] [2025-01-02 00:54:15,920] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA:
[testng] [2025-01-02 00:54:16,256] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA:
[testng] [2025-01-02 00:54:16,567] [pool-1-thread-9] Initializing /data/samples/UBW8.TGA:
[testng] [2025-01-02 00:54:16,841] [pool-1-thread-1] Initializing /data/samples/FLAG_B32.TGA:
[testng] [2025-01-02 00:54:17,115] [pool-1-thread-12] Initializing /data/samples/UTC32.TGA:
[testng] [2025-01-02 00:54:17,425] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA:
[testng] [2025-01-02 00:54:17,706] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2025-01-02 00:54:17,963] [pool-1-thread-8] Initializing /data/samples/MARBLES.TGA:
[testng] [2025-01-02 00:54:18,217] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS