Started by upstream project "BIOFORMATS-test-repo" build number 4
originally caused by:
 Started by upstream project "Trigger" build number 5
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5452125874998242649.sh
+ '[' cellh5 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_485_merge_ci -v /uod/idr/repos/curated/cellh5:/data -v /uod/idr-scratch/merge-ci/curated/cellh5:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 00:22:57,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:22:57,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 00:22:57,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:57,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:57,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:22:57,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:22:57,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:22:57,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:57,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:57,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:22:57,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:22:57,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:22:58,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:22:58,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:22:58,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:22:58,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:22:58,146 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:22:58,147 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:22:58,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:22:58,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:22:58,147 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 00:22:58,148 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 00:22:58,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-17 00:22:58,156] [main] java.version = 17.0.2
   [testng] 00:22:58,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:22:58,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:58,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-17_00-22-58.log]
   [testng] 00:22:58,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-03-17 00:22:58,200] [main] testng.directory = /data
   [testng] [2024-03-17 00:22:58,200] [main] testng.configDirectory = /config
   [testng] [2024-03-17 00:22:58,208] [main] testng.multiplier = 1.0
   [testng] [2024-03-17 00:22:58,209] [main] testng.in-memory = false
   [testng] [2024-03-17 00:22:58,209] [main] testng.allow-missing = false
   [testng] [2024-03-17 00:22:58,209] [main] user.language = en
   [testng] [2024-03-17 00:22:58,209] [main] user.country = ${user.country}
   [testng] [2024-03-17 00:22:58,209] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-17 00:22:58,550] [main] ----------------------------------------
   [testng] [2024-03-17 00:22:58,550] [main] Total files: 11
   [testng] [2024-03-17 00:22:58,551] [main] Scan time: 0.341 s (31 ms/file)
   [testng] [2024-03-17 00:22:58,551] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 10 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-17 00:29:03,523] [pool-1-thread-1] Initializing /data/public/samples/full/0037.ch5: 
   [testng] 00:29:03,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:29:03,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:03,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-17_00-29-03.log]
   [testng] 00:29:03,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c0e98f7 - End of configuration.
   [testng] [2024-03-17 00:29:03,716] [pool-1-thread-10] Initializing /data/public/samples/full/0046.ch5: 
   [testng] 00:29:03,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:29:03,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:03,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-17_00-29-03.log]
   [testng] 00:29:03,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68657cc4 - End of configuration.
   [testng] [2024-03-17 00:29:03,820] [pool-1-thread-9] Initializing /data/public/samples/full/0041.ch5: 
   [testng] 00:29:03,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:29:03,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:03,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-17_00-29-03.log]
   [testng] 00:29:03,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73df6581 - End of configuration.
   [testng] [2024-03-17 00:29:04,927] [pool-1-thread-8] Initializing /data/public/samples/reduced/0038.ch5: 
   [testng] 00:29:04,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:29:04,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:04,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-17_00-29-04.log]
   [testng] 00:29:04,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b57e0f - End of configuration.
   [testng] [2024-03-17 00:29:05,192] [pool-1-thread-7] Initializing /data/public/samples/full/0039.ch5: 
   [testng] 00:29:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:29:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:05,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-17_00-29-05.log]
   [testng] 00:29:05,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59666446 - End of configuration.
   [testng] [2024-03-17 00:29:05,395] [pool-1-thread-6] Initializing /data/public/samples/full/0042.ch5: 
   [testng] 00:29:05,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:29:05,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:05,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-17_00-29-05.log]
   [testng] 00:29:05,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e8a2e1 - End of configuration.
   [testng] [2024-03-17 00:29:05,949] [pool-1-thread-5] Initializing /data/public/samples/full/0013.ch5: 
   [testng] 00:29:05,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:29:05,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:05,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-17_00-29-05.log]
   [testng] 00:29:05,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d6ebbf - End of configuration.
   [testng] [2024-03-17 00:29:06,296] [pool-1-thread-4] Initializing /data/public/idr0013/00001_01.ch5: 
   [testng] 00:29:06,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:29:06,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:06,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-17_00-29-06.log]
   [testng] 00:29:06,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8323232 - End of configuration.
   [testng] [2024-03-17 00:29:06,444] [pool-1-thread-3] Initializing /data/public/samples/full/0040.ch5: 
   [testng] 00:29:06,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:29:06,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:06,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-17_00-29-06.log]
   [testng] 00:29:06,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33b572ee - End of configuration.
   [testng] [2024-03-17 00:29:06,622] [pool-1-thread-2] Initializing /data/public/samples/full/0045.ch5: 
   [testng] 00:29:06,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:29:06,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:06,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-17_00-29-06.log]
   [testng] 00:29:06,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121ab69f - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 530, Failures: 0, Skips: 10
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 21 minutes 57 seconds
Finished: SUCCESS