Started by upstream project "BIOFORMATS-test-repo" build number 307
originally caused by:
Started by upstream project "Trigger" build number 329
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16496807718284906535.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48686_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:28:59,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:28:59,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 03:28:59,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:28:59,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:28:59,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:28:59,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:28:59,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:28:59,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:28:59,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:28:59,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:28:59,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:28:59,764 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:29:00,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:29:00,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:29:00,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:29:00,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:29:00,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:29:00,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:29:00,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:29:00,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:29:00,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 03:29:00,081 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 03:29:00,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 318 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-03 03:29:00,091] [main] java.version = 1.8.0_342
[testng] 03:29:00,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:29:00,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:00,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_03-29-00.log]
[testng] 03:29:00,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2025-01-03 03:29:00,148] [main] testng.directory = /data
[testng] [2025-01-03 03:29:00,148] [main] testng.configDirectory = /config
[testng] [2025-01-03 03:29:00,161] [main] testng.multiplier = 1.0
[testng] [2025-01-03 03:29:00,161] [main] testng.in-memory = false
[testng] [2025-01-03 03:29:00,161] [main] testng.allow-missing = false
[testng] [2025-01-03 03:29:00,161] [main] user.language = en
[testng] [2025-01-03 03:29:00,161] [main] user.country = ${user.country}
[testng] [2025-01-03 03:29:00,161] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-01-03 03:29:00,961] [main] ----------------------------------------
[testng] [2025-01-03 03:29:00,961] [main] Total files: 18
[testng] [2025-01-03 03:29:00,961] [main] Scan time: 0.799 s (44 ms/file)
[testng] [2025-01-03 03:29:00,961] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-03 03:29:10,273] [pool-1-thread-1] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 03:29:10,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:29:10,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:10,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-03_03-29-10.log]
[testng] 03:29:10,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6024ca14 - End of configuration.
[testng] [2025-01-03 03:29:11,029] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd:
[testng] 03:29:11,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:29:11,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:11,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-03_03-29-11.log]
[testng] 03:29:11,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed81131 - End of configuration.
[testng] [2025-01-03 03:29:11,510] [pool-1-thread-11] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 03:29:11,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:29:11,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:11,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-03_03-29-11.log]
[testng] 03:29:11,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1223565b - End of configuration.
[testng] [2025-01-03 03:29:11,871] [pool-1-thread-10] Initializing /data/misc/smilie.psd:
[testng] 03:29:11,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:29:11,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:11,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-03_03-29-11.log]
[testng] 03:29:11,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4af5d01a - End of configuration.
[testng] [2025-01-03 03:29:12,219] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 03:29:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:29:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:12,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-03_03-29-12.log]
[testng] 03:29:12,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f4e031e - End of configuration.
[testng] [2025-01-03 03:29:12,575] [pool-1-thread-8] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 03:29:12,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:29:12,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:12,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-03_03-29-12.log]
[testng] 03:29:12,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576477ae - End of configuration.
[testng] [2025-01-03 03:29:12,927] [pool-1-thread-7] Initializing /data/ascb/607x.psd:
[testng] 03:29:12,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:29:12,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:12,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-03_03-29-12.log]
[testng] 03:29:12,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75613e3c - End of configuration.
[testng] [2025-01-03 03:29:13,356] [pool-1-thread-6] Initializing /data/cris/house.tif:
[testng] 03:29:13,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:29:13,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:13,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-03_03-29-13.log]
[testng] 03:29:13,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4973cca5 - End of configuration.
[testng] [2025-01-03 03:29:14,945] [pool-1-thread-5] Initializing /data/ascb/423.psd:
[testng] 03:29:14,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:29:14,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:14,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-03_03-29-14.log]
[testng] 03:29:14,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e0b016 - End of configuration.
[testng] [2025-01-03 03:29:15,318] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd:
[testng] 03:29:15,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:29:15,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:15,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-03_03-29-15.log]
[testng] 03:29:15,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45879342 - End of configuration.
[testng] [2025-01-03 03:29:15,771] [pool-1-thread-3] Initializing /data/misc/glossy_buttons.psd:
[testng] 03:29:15,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:29:15,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:15,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-03_03-29-15.log]
[testng] 03:29:15,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c5c2c2 - End of configuration.
[testng] [2025-01-03 03:29:16,134] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd:
[testng] 03:29:16,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:29:16,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:29:16,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_03-29-16.log]
[testng] 03:29:16,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ca8d1d - End of configuration.
[testng] [2025-01-03 03:29:22,915] [pool-1-thread-2] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] [2025-01-03 03:29:23,293] [pool-1-thread-4] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] [2025-01-03 03:29:23,682] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] [2025-01-03 03:29:24,080] [pool-1-thread-3] Initializing /data/misc/venus_composite.psd:
[testng] [2025-01-03 03:29:24,448] [pool-1-thread-10] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2025-01-03 03:29:24,865] [pool-1-thread-12] Initializing /data/big-images/8kx8k.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 46 seconds
Finished: SUCCESS