Started by upstream project "BIOFORMATS-test-repo" build number 307
originally caused by:
Started by upstream project "Trigger" build number 329
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17235066722769367747.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48702_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:15:07,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:15:07,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:15:07,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:15:07,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:15:07,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:15:07,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:15:07,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:15:07,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:15:07,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:15:07,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:15:07,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:15:07,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:15:08,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:15:08,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:15:08,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:15:08,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:15:08,095 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:15:08,095 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:15:08,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:15:08,096 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:15:08,096 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:15:08,097 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:15:08,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 250 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-03 04:15:08,106] [main] java.version = 1.8.0_342
[testng] 04:15:08,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:15:08,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:15:08,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_04-15-08.log]
[testng] 04:15:08,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2025-01-03 04:15:08,159] [main] testng.directory = /data
[testng] [2025-01-03 04:15:08,159] [main] testng.configDirectory = /config
[testng] [2025-01-03 04:15:08,171] [main] testng.multiplier = 1.0
[testng] [2025-01-03 04:15:08,171] [main] testng.in-memory = false
[testng] [2025-01-03 04:15:08,172] [main] testng.allow-missing = false
[testng] [2025-01-03 04:15:08,172] [main] user.language = en
[testng] [2025-01-03 04:15:08,172] [main] user.country = ${user.country}
[testng] [2025-01-03 04:15:08,172] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-01-03 04:15:26,490] [main] ----------------------------------------
[testng] [2025-01-03 04:15:26,490] [main] Total files: 23
[testng] [2025-01-03 04:15:26,491] [main] Scan time: 18.318 s (796 ms/file)
[testng] [2025-01-03 04:15:26,491] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-03 04:16:08,103] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr:
[testng] 04:16:08,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:16:08,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:08,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-03_04-16-08.log]
[testng] 04:16:08,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4242f6 - End of configuration.
[testng] [2025-01-03 04:16:08,955] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr:
[testng] 04:16:08,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:16:08,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:08,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-03_04-16-08.log]
[testng] 04:16:08,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e0772a - End of configuration.
[testng] [2025-01-03 04:16:09,776] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr:
[testng] 04:16:09,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:16:09,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:09,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-03_04-16-09.log]
[testng] 04:16:09,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@df6f14c - End of configuration.
[testng] [2025-01-03 04:16:10,478] [pool-1-thread-10] Initializing /data/public/NIH/zstat1.nii:
[testng] 04:16:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:16:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:10,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-03_04-16-10.log]
[testng] 04:16:10,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f12611 - End of configuration.
[testng] [2025-01-03 04:16:11,154] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_RL_nifti.nii:
[testng] 04:16:11,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:16:11,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:11,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-03_04-16-11.log]
[testng] 04:16:11,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@193ce2ab - End of configuration.
[testng] [2025-01-03 04:16:11,943] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr:
[testng] 04:16:11,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:16:11,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:11,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-03_04-16-11.log]
[testng] 04:16:11,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e40f79 - End of configuration.
[testng] [2025-01-03 04:16:12,793] [pool-1-thread-7] Initializing /data/public/NIH/filtered_func_data.nii:
[testng] 04:16:12,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:16:12,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:12,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-03_04-16-12.log]
[testng] 04:16:12,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa5e144 - End of configuration.
[testng] [2025-01-03 04:16:13,938] [pool-1-thread-6] Initializing /data/public/NIH/minimal.hdr:
[testng] 04:16:13,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:16:13,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:13,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-03_04-16-13.log]
[testng] 04:16:13,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6276226d - End of configuration.
[testng] [2025-01-03 04:16:14,684] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_LR_nifti.nii:
[testng] 04:16:14,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:16:14,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:14,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-03_04-16-14.log]
[testng] 04:16:14,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@293e8321 - End of configuration.
[testng] [2025-01-03 04:16:15,322] [pool-1-thread-4] Initializing /data/public/NIH/zstat1.nii.gz:
[testng] 04:16:15,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:16:15,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:15,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-03_04-16-15.log]
[testng] 04:16:15,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ab818e3 - End of configuration.
[testng] [2025-01-03 04:16:17,942] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz:
[testng] 04:16:17,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:16:17,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:17,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-03_04-16-17.log]
[testng] 04:16:17,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dbe478 - End of configuration.
[testng] [2025-01-03 04:16:20,635] [pool-1-thread-2] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz:
[testng] 04:16:20,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:16:20,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:16:20,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_04-16-20.log]
[testng] 04:16:20,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c875 - End of configuration.
[testng] [2025-01-03 04:16:30,456] [pool-1-thread-9] Initializing /data/public/NIH/newsirp_final_XML.nii:
[testng] [2025-01-03 04:16:31,108] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr:
[testng] [2025-01-03 04:16:32,066] [pool-1-thread-10] Initializing /data/public/NIH/filtered_func_data.nii.gz:
[testng] [2025-01-03 04:16:40,014] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr:
[testng] [2025-01-03 04:16:42,091] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr:
[testng] [2025-01-03 04:16:43,039] [pool-1-thread-12] Initializing /data/public/NIH/minimal.nii:
[testng] [2025-01-03 04:16:44,104] [pool-1-thread-11] Initializing /data/qa-17334/volume4d.nii:
[testng] [2025-01-03 04:16:45,513] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 29 seconds
Finished: SUCCESS