Started by upstream project "BIOFORMATS-test-repo" build number 308
originally caused by:
 Started by upstream project "Trigger" build number 330
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14963198028995345613.sh
+ '[' leica = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48716_merge_ci -v /uod/idr/repos/curated/leica:/data -v /uod/idr-scratch/merge-ci/curated/leica:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:21:36,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:21:36,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:21:36,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:36,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:36,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:21:36,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:21:36,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:21:36,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:36,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:36,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:21:36,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:21:36,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:21:37,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:21:37,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:21:37,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:21:37,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:21:37,067 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:21:37,068 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:21:37,068 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:21:37,068 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:21:37,068 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:21:37,069 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:21:37,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-04 00:21:37,078] [main] java.version = 11.0.16
   [testng] 00:21:37,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:21:37,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:37,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-04_00-21-37.log]
   [testng] 00:21:37,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2025-01-04 00:21:37,127] [main] testng.directory = /data
   [testng] [2025-01-04 00:21:37,127] [main] testng.configDirectory = /config
   [testng] [2025-01-04 00:21:37,136] [main] testng.multiplier = 1.0
   [testng] [2025-01-04 00:21:37,138] [main] testng.in-memory = false
   [testng] [2025-01-04 00:21:37,138] [main] testng.allow-missing = false
   [testng] [2025-01-04 00:21:37,138] [main] user.language = en
   [testng] [2025-01-04 00:21:37,138] [main] user.country = ${user.country}
   [testng] [2025-01-04 00:21:37,138] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-04 00:21:50,752] [main] ----------------------------------------
   [testng] [2025-01-04 00:21:50,753] [main] Total files: 5651
   [testng] [2025-01-04 00:21:50,753] [main] Scan time: 13.614 s (2 ms/file)
   [testng] [2025-01-04 00:21:50,754] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 44 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-04 00:22:15,009] [pool-1-thread-1] Initializing /data/constantin/cell6/Logo.jpg: 
   [testng] 00:22:15,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:22:15,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-04_00-22-15.log]
   [testng] 00:22:15,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fa45c9 - End of configuration.
   [testng] [2025-01-04 00:22:15,051] [pool-1-thread-12] Initializing /data/constantin/cell6/Quant_Image_02.jpg: 
   [testng] 00:22:15,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:22:15,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-04_00-22-15.log]
   [testng] 00:22:15,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45fd41fb - End of configuration.
   [testng] [2025-01-04 00:22:15,079] [pool-1-thread-11] Initializing /data/martin/samples-SP2/samples-SP2.lei: 
   [testng] 00:22:15,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:22:15,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-04_00-22-15.log]
   [testng] 00:22:15,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec8a01b - End of configuration.
   [testng] [2025-01-04 00:22:15,283] [pool-1-thread-10] Initializing /data/julie/biorad/8291mcd8_raw01.pic: 
   [testng] 00:22:15,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:22:15,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-04_00-22-15.log]
   [testng] 00:22:15,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5607928d - End of configuration.
   [testng] [2025-01-04 00:22:15,434] [pool-1-thread-9] Initializing /data/julie/biorad/25-65.tif: 
   [testng] 00:22:15,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:22:15,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-04_00-22-15.log]
   [testng] 00:22:15,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c44902 - End of configuration.
   [testng] [2025-01-04 00:22:15,710] [pool-1-thread-8] Initializing /data/constantin/cell6/Quant_Image_00.jpg: 
   [testng] 00:22:15,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:22:15,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-04_00-22-15.log]
   [testng] 00:22:15,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a492069 - End of configuration.
   [testng] [2025-01-04 00:22:15,736] [pool-1-thread-7] Initializing /data/christophe/Leica stacks/Nf5.lei: 
   [testng] 00:22:15,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:22:15,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-04_00-22-15.log]
   [testng] 00:22:15,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394d7dcd - End of configuration.
   [testng] [2025-01-04 00:22:15,978] [pool-1-thread-6] Initializing /data/simon/Leica demo/test/test.lei: 
   [testng] 00:22:15,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:22:15,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-04_00-22-15.log]
   [testng] 00:22:15,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1ac513 - End of configuration.
   [testng] [2025-01-04 00:22:16,296] [pool-1-thread-5] Initializing /data/joel/sequential scan 3/sequential scan 3.lei: 
   [testng] 00:22:16,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:22:16,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:16,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-04_00-22-16.log]
   [testng] 00:22:16,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a5e3fe4 - End of configuration.
   [testng] [2025-01-04 00:22:16,588] [pool-1-thread-4] Initializing /data/david/megan/megan.lei: 
   [testng] 00:22:16,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:22:16,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:16,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-04_00-22-16.log]
   [testng] 00:22:16,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96e3986 - End of configuration.
   [testng] [2025-01-04 00:22:16,902] [pool-1-thread-3] Initializing /data/brian/leica-original/050118.lei: 
   [testng] 00:22:16,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:22:16,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:16,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-04_00-22-16.log]
   [testng] 00:22:16,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74b2750c - End of configuration.
   [testng] [2025-01-04 00:22:17,725] [pool-1-thread-2] Initializing /data/mark/071026-561nm check/071026-561nm check.lei: 
   [testng] 00:22:17,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:22:17,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:17,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-04_00-22-17.log]
   [testng] 00:22:17,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9a3afa - End of configuration.
   [testng] [2025-01-04 00:22:20,170] [pool-1-thread-8] Initializing /data/constantin/cell6/cell6.lei: 
   [testng] [2025-01-04 00:22:20,627] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Quant_Image_01.jpg: 
   [testng] [2025-01-04 00:22:20,692] [pool-1-thread-12] Initializing /data/simon/Leica demo/GFP-YFPcaax/GFP-YFPcaax.lei: 
   [testng] [2025-01-04 00:22:22,930] [pool-1-thread-1] Initializing /data/berra/eggcmgfp230909/eggcmgfp230909.lei: 
   [testng] [2025-01-04 00:22:23,573] [pool-1-thread-9] Initializing /data/julie/c164_1.tif: 
   [testng] [2025-01-04 00:22:25,552] [pool-1-thread-10] Initializing /data/simon/Leica demo/fish/fish.lei: 
   [testng] [2025-01-04 00:22:33,318] [pool-1-thread-9] Initializing /data/clay/leica_stack.tif: 
   [testng] [2025-01-04 00:22:37,521] [pool-1-thread-9] Initializing /data/david/intestine/intestine.lei: 
   [testng] [2025-01-04 00:24:28,438] [pool-1-thread-7] Initializing /data/vytas/4voxels/4voxels.lei: 
   [testng] [2025-01-04 00:25:02,000] [pool-1-thread-12] Initializing /data/brian/050627-leica/050628-leica.lei: 
   [testng] [2025-01-04 00:27:44,294] [pool-1-thread-11] Initializing /data/simon/Leica demo/RNA FISH/RNA FISH.lei: 
   [testng] [2025-01-04 00:27:54,647] [pool-1-thread-8] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/070123_HippoQ2Q3.lei: 
   [testng] [2025-01-04 00:27:58,038] [pool-1-thread-5] Initializing /data/clay/leica_stack-exported/leica_stack-exported.lei: 
   [testng] [2025-01-04 00:28:16,665] [pool-1-thread-5] Initializing /data/joel/sequential scan 2/sequential scan 2.lei: 
   [testng] [2025-01-04 00:28:21,501] [pool-1-thread-9] Initializing /data/constantin/cell6/Quant_Image_01.jpg: 
   [testng] [2025-01-04 00:28:24,109] [pool-1-thread-9] Initializing /data/michael/2007-01-31_zres_sp2.lei: 
   [testng] [2025-01-04 00:28:38,497] [pool-1-thread-4] Initializing /data/andrey/10310500/10310500.lei: 
   [testng] [2025-01-04 00:28:42,422] [pool-1-thread-9] Initializing /data/stjude/NIHSSE02-3.lei: 
   [testng] [2025-01-04 00:28:57,587] [pool-1-thread-2] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/Exemple.tif: 
   [testng] [2025-01-04 00:29:03,126] [pool-1-thread-2] Initializing /data/matija/PapilioScale40x/PapilioScale40x.lei: 
   [testng] [2025-01-04 00:29:26,170] [pool-1-thread-9] Initializing /data/constantin/cell6/cell6/Quant_Image_00.jpg: 
   [testng] [2025-01-04 00:29:28,772] [pool-1-thread-9] Initializing /data/martin/100422_02-rg-100x_CF1/100422_02-rg-100x_CF1.lei: 
   [testng] [2025-01-04 00:29:30,608] [pool-1-thread-6] Initializing /data/simon/Leica demo/CFP-DsRed YFP neg/CFP-DsRed YFP neg.lei: 
   [testng] [2025-01-04 00:29:55,647] [pool-1-thread-8] Initializing /data/grant/Leica SP2 (25-11-10).lei: 
   [testng] [2025-01-04 00:29:59,462] [pool-1-thread-1] Initializing /data/brian/tropo/tropo.lei: 
   [testng] [2025-01-04 00:30:07,630] [pool-1-thread-11] Initializing /data/constantin/cell6/cell6/Quant_Image_02.jpg: 
   [testng] [2025-01-04 00:30:09,516] [pool-1-thread-11] Initializing /data/clay/leica_stack.lei: 
   [testng] [2025-01-04 00:30:15,391] [pool-1-thread-1] Initializing /data/samples/Leica_sample.lei: 
   [testng] [2025-01-04 00:30:20,906] [pool-1-thread-11] Initializing /data/constantin/cell6/Graphs_1_00.jpg: 
   [testng] [2025-01-04 00:30:22,297] [pool-1-thread-1] Initializing /data/constantin/cell6/cell6/Logo.jpg: 
   [testng] [2025-01-04 00:30:22,793] [pool-1-thread-11] Initializing /data/christophe/LEI_Saturated_Bug/Saturated_Problem.tif: 
   [testng] [2025-01-04 00:30:24,139] [pool-1-thread-1] Initializing /data/oliver/o459/o459.lei: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2332, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 47 minutes 29 seconds
Finished: SUCCESS