Started by upstream project "BIOFORMATS-test-repo" build number 309
originally caused by:
Started by upstream project "Trigger" build number 331
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4889804608149848236.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48926_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:45:47,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:45:47,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:45:47,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:45:47,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:45:47,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:45:47,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:45:47,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:45:47,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:45:47,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:45:47,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:45:47,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:45:47,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:45:48,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:45:48,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:45:48,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:45:48,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:45:48,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:45:48,046 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:45:48,046 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:45:48,047 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:45:48,047 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:45:48,047 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:45:48,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-05 00:45:48,056] [main] java.version = 17.0.2
[testng] 00:45:48,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:45:48,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:45:48,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-05_00-45-48.log]
[testng] 00:45:48,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-05 00:45:48,104] [main] testng.directory = /data
[testng] [2025-01-05 00:45:48,105] [main] testng.configDirectory = /config
[testng] [2025-01-05 00:45:48,114] [main] testng.multiplier = 1.0
[testng] [2025-01-05 00:45:48,115] [main] testng.in-memory = false
[testng] [2025-01-05 00:45:48,115] [main] testng.allow-missing = false
[testng] [2025-01-05 00:45:48,115] [main] user.language = en
[testng] [2025-01-05 00:45:48,115] [main] user.country = ${user.country}
[testng] [2025-01-05 00:45:48,115] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-05 00:45:49,479] [main] ----------------------------------------
[testng] [2025-01-05 00:45:49,479] [main] Total files: 14
[testng] [2025-01-05 00:45:49,479] [main] Scan time: 1.364 s (97 ms/file)
[testng] [2025-01-05 00:45:49,480] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-05 00:46:06,874] [pool-1-thread-1] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:46:06,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:46:06,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:06,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-05_00-46-06.log]
[testng] 00:46:06,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c12a6a - End of configuration.
[testng] [2025-01-05 00:46:07,198] [pool-1-thread-12] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:46:07,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:46:07,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:07,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-05_00-46-07.log]
[testng] 00:46:07,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c8a4e42 - End of configuration.
[testng] [2025-01-05 00:46:07,377] [pool-1-thread-11] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:46:07,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:46:07,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:07,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-05_00-46-07.log]
[testng] 00:46:07,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b03d555 - End of configuration.
[testng] [2025-01-05 00:46:07,835] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:46:07,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:46:07,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:07,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-05_00-46-07.log]
[testng] 00:46:07,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5687976e - End of configuration.
[testng] [2025-01-05 00:46:08,185] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 00:46:08,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:46:08,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:08,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-05_00-46-08.log]
[testng] 00:46:08,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc9ed8b - End of configuration.
[testng] [2025-01-05 00:46:08,964] [pool-1-thread-8] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:46:08,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:46:08,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:08,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-05_00-46-08.log]
[testng] 00:46:08,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a0b0b1 - End of configuration.
[testng] [2025-01-05 00:46:11,207] [pool-1-thread-7] Initializing /data/samples/BigTIFF.tif:
[testng] 00:46:11,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:46:11,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:11,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-05_00-46-11.log]
[testng] 00:46:11,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6730cdf6 - End of configuration.
[testng] [2025-01-05 00:46:12,494] [pool-1-thread-6] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:46:12,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:46:12,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:12,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-05_00-46-12.log]
[testng] 00:46:12,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7cbbef - End of configuration.
[testng] [2025-01-05 00:46:12,862] [pool-1-thread-5] Initializing /data/samples/Classic.tif:
[testng] 00:46:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:46:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:12,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-05_00-46-12.log]
[testng] 00:46:12,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72871f54 - End of configuration.
[testng] [2025-01-05 00:46:13,205] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:46:13,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:46:13,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:13,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-05_00-46-13.log]
[testng] 00:46:13,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62659b24 - End of configuration.
[testng] [2025-01-05 00:46:13,696] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:46:13,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:46:13,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:13,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-05_00-46-13.log]
[testng] 00:46:13,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1076c6 - End of configuration.
[testng] [2025-01-05 00:46:14,147] [pool-1-thread-2] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:46:14,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:46:14,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:14,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-05_00-46-14.log]
[testng] 00:46:14,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@223d48db - End of configuration.
[testng] [2025-01-05 00:46:21,503] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 49 seconds
Finished: SUCCESS