Started by upstream project "BIOFORMATS-test-repo" build number 4
originally caused by:
Started by upstream project "Trigger" build number 5
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17202554891912135688.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_490_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:26:42,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:26:42,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 00:26:42,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:42,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:42,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:26:42,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:26:42,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:26:42,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:42,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:42,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:26:42,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:26:42,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:26:42,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:26:42,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:26:42,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:26:42,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:26:42,507 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:26:42,507 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:26:42,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:26:42,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:26:42,508 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 00:26:42,509 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 00:26:42,509 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-17 00:26:42,519] [main] java.version = 17.0.2
[testng] 00:26:42,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:26:42,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:42,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-17_00-26-42.log]
[testng] 00:26:42,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-17 00:26:42,580] [main] testng.directory = /data
[testng] [2024-03-17 00:26:42,580] [main] testng.configDirectory = /config
[testng] [2024-03-17 00:26:42,601] [main] testng.multiplier = 1.0
[testng] [2024-03-17 00:26:42,602] [main] testng.in-memory = false
[testng] [2024-03-17 00:26:42,602] [main] testng.allow-missing = false
[testng] [2024-03-17 00:26:42,602] [main] user.language = en
[testng] [2024-03-17 00:26:42,602] [main] user.country = ${user.country}
[testng] [2024-03-17 00:26:42,602] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-17 00:26:43,826] [main] ----------------------------------------
[testng] [2024-03-17 00:26:43,826] [main] Total files: 21
[testng] [2024-03-17 00:26:43,826] [main] Scan time: 1.224 s (58 ms/file)
[testng] [2024-03-17 00:26:43,826] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-17 00:26:51,965] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 00:26:51,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:26:51,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:51,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-17_00-26-51.log]
[testng] 00:26:51,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43b71121 - End of configuration.
[testng] [2024-03-17 00:26:52,306] [pool-1-thread-12] Initializing /data/venu/VENU03.IMG:
[testng] 00:26:52,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:26:52,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:52,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-17_00-26-52.log]
[testng] 00:26:52,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67ba4061 - End of configuration.
[testng] [2024-03-17 00:26:52,358] [pool-1-thread-11] Initializing /data/venu/VENU_Six.TIF:
[testng] 00:26:52,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:26:52,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:52,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-17_00-26-52.log]
[testng] 00:26:52,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470555a0 - End of configuration.
[testng] [2024-03-17 00:26:52,493] [pool-1-thread-10] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 00:26:52,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:26:52,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:52,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-17_00-26-52.log]
[testng] 00:26:52,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@150551cc - End of configuration.
[testng] [2024-03-17 00:26:52,960] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF:
[testng] 00:26:52,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:26:52,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:52,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-17_00-26-52.log]
[testng] 00:26:52,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67a0fbeb - End of configuration.
[testng] [2024-03-17 00:26:53,204] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 00:26:53,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:26:53,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:53,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-17_00-26-53.log]
[testng] 00:26:53,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bd5d7fe - End of configuration.
[testng] [2024-03-17 00:26:53,998] [pool-1-thread-7] Initializing /data/venu/VENU02.IMG:
[testng] 00:26:53,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:26:53,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:53,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-17_00-26-53.log]
[testng] 00:26:54,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c4b3263 - End of configuration.
[testng] [2024-03-17 00:26:54,154] [pool-1-thread-6] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:26:54,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:26:54,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:54,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-17_00-26-54.log]
[testng] 00:26:54,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10162509 - End of configuration.
[testng] [2024-03-17 00:26:54,607] [pool-1-thread-5] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 00:26:54,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:26:54,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:54,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-17_00-26-54.log]
[testng] 00:26:54,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b994310 - End of configuration.
[testng] [2024-03-17 00:26:55,160] [pool-1-thread-4] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:26:55,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:26:55,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:55,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-17_00-26-55.log]
[testng] 00:26:55,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b606581 - End of configuration.
[testng] [2024-03-17 00:26:55,765] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 00:26:55,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:26:55,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:55,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-17_00-26-55.log]
[testng] 00:26:55,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b1b9689 - End of configuration.
[testng] [2024-03-17 00:26:56,095] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 00:26:56,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:26:56,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:56,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-17_00-26-56.log]
[testng] 00:26:56,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69eb9dc9 - End of configuration.
[testng] [2024-03-17 00:26:59,147] [pool-1-thread-12] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] [2024-03-17 00:26:59,420] [pool-1-thread-7] Initializing /data/venu/VENU01.IMG:
[testng] [2024-03-17 00:26:59,989] [pool-1-thread-9] Initializing /data/venu/VENU_Four.TIF:
[testng] [2024-03-17 00:27:00,532] [pool-1-thread-4] Initializing /data/venu/VENU.TIF:
[testng] [2024-03-17 00:27:00,898] [pool-1-thread-5] Initializing /data/venu/VENU03.TIF:
[testng] [2024-03-17 00:27:01,151] [pool-1-thread-1] Initializing /data/venu/VENU01.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS