Started by upstream project "BIOFORMATS-test-repo" build number 309
originally caused by:
 Started by upstream project "Trigger" build number 331
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14109347344123189458.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49032_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 04:17:46,707 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:17:46,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 04:17:46,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:17:46,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:17:46,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:17:46,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:17:46,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:17:46,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:17:46,711 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:17:46,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:17:46,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:17:46,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:17:46,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:17:46,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:17:46,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:17:46,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:17:46,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:17:46,893 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:17:46,893 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:17:46,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:17:46,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 04:17:46,894 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 04:17:46,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-05 04:17:46,903] [main] java.version = 17.0.2
   [testng] 04:17:46,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:17:46,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:17:46,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-05_04-17-46.log]
   [testng] 04:17:46,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2025-01-05 04:17:46,947] [main] testng.directory = /data
   [testng] [2025-01-05 04:17:46,948] [main] testng.configDirectory = /config
   [testng] [2025-01-05 04:17:46,956] [main] testng.multiplier = 1.0
   [testng] [2025-01-05 04:17:46,957] [main] testng.in-memory = false
   [testng] [2025-01-05 04:17:46,957] [main] testng.allow-missing = false
   [testng] [2025-01-05 04:17:46,957] [main] user.language = en
   [testng] [2025-01-05 04:17:46,957] [main] user.country = ${user.country}
   [testng] [2025-01-05 04:17:46,957] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-05 04:18:01,533] [main] ----------------------------------------
   [testng] [2025-01-05 04:18:01,534] [main] Total files: 23
   [testng] [2025-01-05 04:18:01,534] [main] Scan time: 14.576 s (633 ms/file)
   [testng] [2025-01-05 04:18:01,534] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-05 04:18:36,817] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] 04:18:36,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:18:36,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:36,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-05_04-18-36.log]
   [testng] 04:18:36,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4691e396 - End of configuration.
   [testng] [2025-01-05 04:18:37,617] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] 04:18:37,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:18:37,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:37,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-05_04-18-37.log]
   [testng] 04:18:37,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d28099 - End of configuration.
   [testng] [2025-01-05 04:18:38,389] [pool-1-thread-11] Initializing /data/public/NIH/minimal.nii: 
   [testng] 04:18:38,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:18:38,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:38,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-05_04-18-38.log]
   [testng] 04:18:38,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28488088 - End of configuration.
   [testng] [2025-01-05 04:18:39,110] [pool-1-thread-10] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 04:18:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:18:39,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:39,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-05_04-18-39.log]
   [testng] 04:18:39,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@404c2f9a - End of configuration.
   [testng] [2025-01-05 04:18:39,799] [pool-1-thread-9] Initializing /data/public/NIH/zstat1.nii: 
   [testng] 04:18:39,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:18:39,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:39,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-05_04-18-39.log]
   [testng] 04:18:39,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee0d7d6 - End of configuration.
   [testng] [2025-01-05 04:18:40,497] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] 04:18:40,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:18:40,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:40,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-05_04-18-40.log]
   [testng] 04:18:40,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e857fd - End of configuration.
   [testng] [2025-01-05 04:18:41,350] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 04:18:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:18:41,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:41,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-05_04-18-41.log]
   [testng] 04:18:41,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6091627b - End of configuration.
   [testng] [2025-01-05 04:18:42,085] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] 04:18:42,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:18:42,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:42,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-05_04-18-42.log]
   [testng] 04:18:42,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43b32c40 - End of configuration.
   [testng] [2025-01-05 04:18:42,794] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] 04:18:42,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:18:42,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:42,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-05_04-18-42.log]
   [testng] 04:18:42,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fa9e9e - End of configuration.
   [testng] [2025-01-05 04:18:43,543] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 04:18:43,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:18:43,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:43,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-05_04-18-43.log]
   [testng] 04:18:43,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c2cd4d - End of configuration.
   [testng] [2025-01-05 04:18:44,246] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] 04:18:44,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:18:44,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:44,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-05_04-18-44.log]
   [testng] 04:18:44,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2661ce21 - End of configuration.
   [testng] [2025-01-05 04:18:44,976] [pool-1-thread-2] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] 04:18:44,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:18:44,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:44,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-05_04-18-44.log]
   [testng] 04:18:44,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@542e4b67 - End of configuration.
   [testng] [2025-01-05 04:18:57,516] [pool-1-thread-10] Initializing /data/public/NIH/minimal.hdr: 
   [testng] [2025-01-05 04:18:58,271] [pool-1-thread-11] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] [2025-01-05 04:18:59,011] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] [2025-01-05 04:18:59,751] [pool-1-thread-9] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] [2025-01-05 04:19:03,891] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] [2025-01-05 04:19:04,695] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] [2025-01-05 04:19:07,859] [pool-1-thread-1] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] [2025-01-05 04:19:10,876] [pool-1-thread-6] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 57 seconds
Finished: SUCCESS