Started by upstream project "BIOFORMATS-test-repo" build number 309
originally caused by:
Started by upstream project "Trigger" build number 331
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3899843608894855290.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49041_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:35:48,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:35:48,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 04:35:48,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:35:48,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:35:48,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:35:48,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:35:48,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:35:48,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:35:48,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:35:48,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:35:48,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:35:48,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:35:48,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:35:48,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:35:48,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:35:48,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:35:48,587 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:35:48,587 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:35:48,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:35:48,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:35:48,588 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 04:35:48,589 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 04:35:48,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-05 04:35:48,598] [main] java.version = 17.0.2
[testng] 04:35:48,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:35:48,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:48,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-05_04-35-48.log]
[testng] 04:35:48,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-05 04:35:48,645] [main] testng.directory = /data
[testng] [2025-01-05 04:35:48,645] [main] testng.configDirectory = /config
[testng] [2025-01-05 04:35:48,654] [main] testng.multiplier = 1.0
[testng] [2025-01-05 04:35:48,654] [main] testng.in-memory = false
[testng] [2025-01-05 04:35:48,655] [main] testng.allow-missing = false
[testng] [2025-01-05 04:35:48,655] [main] user.language = en
[testng] [2025-01-05 04:35:48,655] [main] user.country = ${user.country}
[testng] [2025-01-05 04:35:48,655] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-05 04:35:53,374] [main] ----------------------------------------
[testng] [2025-01-05 04:35:53,375] [main] Total files: 22
[testng] [2025-01-05 04:35:53,375] [main] Scan time: 4.719 s (214 ms/file)
[testng] [2025-01-05 04:35:53,375] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-05 04:36:11,745] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 04:36:11,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:36:11,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:11,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-05_04-36-11.log]
[testng] 04:36:11,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fbbb2dd - End of configuration.
[testng] [2025-01-05 04:36:12,159] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] 04:36:12,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:36:12,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:12,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-05_04-36-12.log]
[testng] 04:36:12,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16b972ac - End of configuration.
[testng] [2025-01-05 04:36:12,624] [pool-1-thread-11] Initializing /data/converted/clown8c.tif:
[testng] 04:36:12,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:36:12,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:12,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-05_04-36-12.log]
[testng] 04:36:12,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f6774d - End of configuration.
[testng] [2025-01-05 04:36:13,669] [pool-1-thread-10] Initializing /data/converted/mitosis-test.ipw:
[testng] 04:36:13,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:36:13,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:13,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-05_04-36-13.log]
[testng] 04:36:13,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a19720 - End of configuration.
[testng] [2025-01-05 04:36:14,118] [pool-1-thread-9] Initializing /data/converted/clown.seq:
[testng] 04:36:14,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:36:14,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:14,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-05_04-36-14.log]
[testng] 04:36:14,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a2a2898 - End of configuration.
[testng] [2025-01-05 04:36:14,546] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ:
[testng] 04:36:14,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:36:14,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:14,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-05_04-36-14.log]
[testng] 04:36:14,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f6249c - End of configuration.
[testng] [2025-01-05 04:36:14,963] [pool-1-thread-7] Initializing /data/converted/dub01.ipw:
[testng] 04:36:14,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:36:14,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:14,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-05_04-36-14.log]
[testng] 04:36:14,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5d248 - End of configuration.
[testng] [2025-01-05 04:36:15,357] [pool-1-thread-6] Initializing /data/converted/clown.tif:
[testng] 04:36:15,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:36:15,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:15,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-05_04-36-15.log]
[testng] 04:36:15,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eca686c - End of configuration.
[testng] [2025-01-05 04:36:15,752] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF:
[testng] 04:36:15,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:36:15,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:15,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-05_04-36-15.log]
[testng] 04:36:15,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf75dbe - End of configuration.
[testng] [2025-01-05 04:36:16,170] [pool-1-thread-4] Initializing /data/converted/clown8c.ipw:
[testng] 04:36:16,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:36:16,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:16,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-05_04-36-16.log]
[testng] 04:36:16,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7874dc53 - End of configuration.
[testng] [2025-01-05 04:36:16,605] [pool-1-thread-3] Initializing /data/converted/clown8c.seq:
[testng] 04:36:16,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:36:16,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:16,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-05_04-36-16.log]
[testng] 04:36:16,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3abea866 - End of configuration.
[testng] [2025-01-05 04:36:17,069] [pool-1-thread-2] Initializing /data/converted/dub01.pic:
[testng] 04:36:17,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:36:17,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:36:17,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-05_04-36-17.log]
[testng] 04:36:17,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25bf4f1d - End of configuration.
[testng] [2025-01-05 04:36:22,143] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF:
[testng] [2025-01-05 04:36:23,248] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq:
[testng] [2025-01-05 04:36:23,752] [pool-1-thread-6] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2025-01-05 04:36:24,923] [pool-1-thread-2] Initializing /data/converted/mitosis-test.tif:
[testng] [2025-01-05 04:36:26,011] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2025-01-05 04:36:26,467] [pool-1-thread-7] Initializing /data/samples/TISSUE.TIF:
[testng] [2025-01-05 04:36:27,519] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq:
[testng] [2025-01-05 04:36:27,978] [pool-1-thread-8] Initializing /data/converted/dub01.seq:
[testng] [2025-01-05 04:36:28,460] [pool-1-thread-1] Initializing /data/converted/clown.ipw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 37 seconds
Finished: SUCCESS