Started by upstream project "BIOFORMATS-test-repo" build number 310 originally caused by: Started by upstream project "Trigger" build number 332 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12081279006817727750.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_49075_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:31:47,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:31:47,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:31:47,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:47,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:47,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:47,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:47,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 16 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:47,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:47,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:47,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:47,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:47,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:47,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:47,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:47,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:47,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:47,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:47,679 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:47,679 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:47,680 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:47,680 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:31:47,680 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:31:47,681 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-06 00:31:47,691] [main] java.version = 1.8.0_342 [testng] 00:31:47,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:47,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:47,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-06_00-31-47.log] [testng] 00:31:47,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-06 00:31:47,744] [main] testng.directory = /data [testng] [2025-01-06 00:31:47,744] [main] testng.configDirectory = /config [testng] [2025-01-06 00:31:47,756] [main] testng.multiplier = 1.0 [testng] [2025-01-06 00:31:47,756] [main] testng.in-memory = false [testng] [2025-01-06 00:31:47,756] [main] testng.allow-missing = false [testng] [2025-01-06 00:31:47,757] [main] user.language = fr [testng] [2025-01-06 00:31:47,757] [main] user.country = FR [testng] [2025-01-06 00:31:47,757] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-06 00:34:45,790] [main] ---------------------------------------- [testng] [2025-01-06 00:34:45,790] [main] Total files: 226 [testng] [2025-01-06 00:34:45,790] [main] Scan time: 178.033 s (787 ms/file) [testng] [2025-01-06 00:34:45,790] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-06 00:36:00,399] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] 00:36:00,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:00,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-06_00-36-00.log] [testng] 00:36:00,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c4800c - End of configuration. [testng] [2025-01-06 00:36:00,433] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] 00:36:00,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:00,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-06_00-36-00.log] [testng] 00:36:00,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12719e4b - End of configuration. [testng] [2025-01-06 00:36:00,481] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL: [testng] 00:36:00,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:00,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-06_00-36-00.log] [testng] 00:36:00,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bf9e0f9 - End of configuration. [testng] [2025-01-06 00:36:00,498] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:36:00,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:00,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-06_00-36-00.log] [testng] 00:36:00,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d6ea29 - End of configuration. [testng] [2025-01-06 00:36:00,655] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 00:36:00,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:00,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-06_00-36-00.log] [testng] 00:36:00,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447a000b - End of configuration. [testng] [2025-01-06 00:36:00,772] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:36:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:00,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-06_00-36-00.log] [testng] 00:36:00,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ce2ab9 - End of configuration. [testng] [2025-01-06 00:36:00,813] [pool-1-thread-7] Initializing /data/iplab/Actin.IPL: [testng] 00:36:00,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:00,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-06_00-36-00.log] [testng] 00:36:00,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f629d01 - End of configuration. [testng] [2025-01-06 00:36:00,836] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 00:36:00,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:00,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-06_00-36-00.log] [testng] 00:36:00,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166f735b - End of configuration. [testng] [2025-01-06 00:36:00,979] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 00:36:00,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:00,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:00,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-06_00-36-00.log] [testng] 00:36:00,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a293a6 - End of configuration. [testng] [2025-01-06 00:36:01,091] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] 00:36:01,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:01,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:01,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-06_00-36-01.log] [testng] 00:36:01,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b82adf - End of configuration. [testng] [2025-01-06 00:36:01,122] [pool-1-thread-3] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:36:01,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:01,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:01,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-06_00-36-01.log] [testng] 00:36:01,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ad8b4b0 - End of configuration. [testng] [2025-01-06 00:36:01,267] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL: [testng] 00:36:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:01,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-06_00-36-01.log] [testng] 00:36:01,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2d22c - End of configuration. [testng] [2025-01-06 00:36:03,078] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-01-06 00:36:03,324] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL: [testng] [2025-01-06 00:36:03,366] [pool-1-thread-2] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2025-01-06 00:36:03,392] [pool-1-thread-12] Initializing /data/fluoview/Sample_XT.tif: [testng] [2025-01-06 00:36:03,625] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2025-01-06 00:36:03,844] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-01-06 00:36:03,893] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-01-06 00:36:04,510] [pool-1-thread-10] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2025-01-06 00:36:04,831] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-01-06 00:36:05,099] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2025-01-06 00:36:05,147] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-01-06 00:36:05,376] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-01-06 00:36:05,835] [pool-1-thread-2] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-01-06 00:36:06,121] [pool-1-thread-11] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2025-01-06 00:36:06,200] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-01-06 00:36:06,338] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 26 seconds Finished: SUCCESS