Started by upstream project "BIOFORMATS-test-repo" build number 311
originally caused by:
Started by upstream project "Trigger" build number 333
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16923061116458795364.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49299_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:52:51,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:52:51,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:52:51,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:52:51,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:52:51,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:52:51,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:52:51,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:52:51,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:52:51,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:52:51,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:52:51,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:52:51,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:52:51,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:52:51,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:52:51,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:52:51,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:52:51,781 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:52:51,781 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:52:51,781 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:52:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:52:51,782 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:52:51,782 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:52:51,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-07 01:52:51,791] [main] java.version = 11.0.16
[testng] 01:52:51,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:52:51,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:51,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_01-52-51.log]
[testng] 01:52:51,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2025-01-07 01:52:51,837] [main] testng.directory = /data
[testng] [2025-01-07 01:52:51,837] [main] testng.configDirectory = /config
[testng] [2025-01-07 01:52:51,846] [main] testng.multiplier = 1.0
[testng] [2025-01-07 01:52:51,847] [main] testng.in-memory = false
[testng] [2025-01-07 01:52:51,848] [main] testng.allow-missing = false
[testng] [2025-01-07 01:52:51,848] [main] user.language = en
[testng] [2025-01-07 01:52:51,848] [main] user.country = ${user.country}
[testng] [2025-01-07 01:52:51,848] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-07 01:52:56,611] [main] ----------------------------------------
[testng] [2025-01-07 01:52:56,611] [main] Total files: 40
[testng] [2025-01-07 01:52:56,611] [main] Scan time: 4.763 s (119 ms/file)
[testng] [2025-01-07 01:52:56,611] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-07 01:53:49,727] [pool-1-thread-1] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] 01:53:49,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:53:49,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:49,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_01-53-49.log]
[testng] 01:53:49,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d7eb3ea - End of configuration.
[testng] [2025-01-07 01:53:49,963] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] 01:53:49,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:53:49,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:49,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_01-53-49.log]
[testng] 01:53:49,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11af76e6 - End of configuration.
[testng] [2025-01-07 01:53:50,219] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] 01:53:50,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:53:50,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:50,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_01-53-50.log]
[testng] 01:53:50,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e68d50 - End of configuration.
[testng] [2025-01-07 01:53:50,565] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] 01:53:50,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:53:50,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:50,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_01-53-50.log]
[testng] 01:53:50,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5f8f34 - End of configuration.
[testng] [2025-01-07 01:53:50,855] [pool-1-thread-9] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] 01:53:50,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:53:50,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:50,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_01-53-50.log]
[testng] 01:53:50,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca9cc48 - End of configuration.
[testng] [2025-01-07 01:53:51,271] [pool-1-thread-8] Initializing /data/kurt/40x_6um.avi:
[testng] 01:53:51,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:53:51,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:51,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_01-53-51.log]
[testng] 01:53:51,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efb2b19 - End of configuration.
[testng] [2025-01-07 01:53:51,497] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] 01:53:51,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:53:51,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:51,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_01-53-51.log]
[testng] 01:53:51,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3aeec - End of configuration.
[testng] [2025-01-07 01:53:51,723] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] 01:53:51,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:53:51,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:51,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_01-53-51.log]
[testng] 01:53:51,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59cfd96e - End of configuration.
[testng] [2025-01-07 01:53:51,931] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 01:53:51,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:53:51,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:51,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_01-53-51.log]
[testng] 01:53:51,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@716b1e22 - End of configuration.
[testng] [2025-01-07 01:53:52,111] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] 01:53:52,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:53:52,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:52,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_01-53-52.log]
[testng] 01:53:52,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25882978 - End of configuration.
[testng] [2025-01-07 01:53:52,310] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 01:53:52,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:53:52,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:52,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_01-53-52.log]
[testng] 01:53:52,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b7c5507 - End of configuration.
[testng] [2025-01-07 01:53:52,514] [pool-1-thread-2] Initializing /data/qa-11011/M-flow10001.avi:
[testng] 01:53:52,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:53:52,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:53:52,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_01-53-52.log]
[testng] 01:53:52,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b36c67e - End of configuration.
[testng] [2025-01-07 01:53:57,763] [pool-1-thread-3] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2025-01-07 01:53:57,988] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2025-01-07 01:53:59,205] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] [2025-01-07 01:53:59,474] [pool-1-thread-6] Initializing /data/ascb/TIRF.avi:
[testng] [2025-01-07 01:53:59,735] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2025-01-07 01:53:59,982] [pool-1-thread-4] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2025-01-07 01:54:00,151] [pool-1-thread-11] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] [2025-01-07 01:54:00,349] [pool-1-thread-7] Initializing /data/chris/APZ04_009.avi:
[testng] [2025-01-07 01:54:01,349] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi:
[testng] [2025-01-07 01:54:01,653] [pool-1-thread-2] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2025-01-07 01:54:02,494] [pool-1-thread-8] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2025-01-07 01:54:02,779] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] [2025-01-07 01:54:04,239] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] [2025-01-07 01:54:04,555] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi:
[testng] [2025-01-07 01:54:04,847] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2025-01-07 01:54:05,066] [pool-1-thread-11] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2025-01-07 01:54:05,266] [pool-1-thread-12] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] [2025-01-07 01:54:06,111] [pool-1-thread-8] Initializing /data/curtis/mri-stack-bf.avi:
[testng] [2025-01-07 01:54:06,325] [pool-1-thread-9] Initializing /data/william/worm.avi:
[testng] [2025-01-07 01:54:06,536] [pool-1-thread-10] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2025-01-07 01:54:06,804] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2025-01-07 01:54:08,484] [pool-1-thread-5] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] [2025-01-07 01:54:09,003] [pool-1-thread-4] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2025-01-07 01:54:09,193] [pool-1-thread-3] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2025-01-07 01:54:09,445] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2025-01-07 01:54:09,675] [pool-1-thread-11] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 27 seconds
Finished: SUCCESS