Started by upstream project "BIOFORMATS-test-repo" build number 311
originally caused by:
 Started by upstream project "Trigger" build number 333
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins4588299460692503553.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49356_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 04:04:17,012 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:04:17,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 04:04:17,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:04:17,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:04:17,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:04:17,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:04:17,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:04:17,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:04:17,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:04:17,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:04:17,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:04:17,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:04:17,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:04:17,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:04:17,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:04:17,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:04:17,203 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:04:17,203 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:04:17,203 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:04:17,204 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:04:17,204 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 04:04:17,205 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 04:04:17,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-07 04:04:17,213] [main] java.version = 11.0.16
   [testng] 04:04:17,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:04:17,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:04:17,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_04-04-17.log]
   [testng] 04:04:17,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2025-01-07 04:04:17,260] [main] testng.directory = /data
   [testng] [2025-01-07 04:04:17,260] [main] testng.configDirectory = /config
   [testng] [2025-01-07 04:04:17,269] [main] testng.multiplier = 1.0
   [testng] [2025-01-07 04:04:17,270] [main] testng.in-memory = false
   [testng] [2025-01-07 04:04:17,270] [main] testng.allow-missing = false
   [testng] [2025-01-07 04:04:17,270] [main] user.language = en
   [testng] [2025-01-07 04:04:17,270] [main] user.country = ${user.country}
   [testng] [2025-01-07 04:04:17,270] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-07 04:04:30,295] [main] ----------------------------------------
   [testng] [2025-01-07 04:04:30,295] [main] Total files: 944
   [testng] [2025-01-07 04:04:30,295] [main] Scan time: 13.025 s (13 ms/file)
   [testng] [2025-01-07 04:04:30,295] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-07 04:06:06,405] [pool-1-thread-1] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 04:06:06,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:06:06,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:06:06,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_04-06-06.log]
   [testng] 04:06:06,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae793c9 - End of configuration.
   [testng] [2025-01-07 04:06:07,574] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 04:06:07,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:06:07,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:06:07,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_04-06-07.log]
   [testng] 04:06:07,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7b7fbf - End of configuration.
   [testng] [2025-01-07 04:06:09,377] [pool-1-thread-11] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 04:06:09,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:06:09,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:06:09,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_04-06-09.log]
   [testng] 04:06:09,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104fb57a - End of configuration.
   [testng] [2025-01-07 04:06:59,357] [pool-1-thread-10] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 04:06:59,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:06:59,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:06:59,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_04-06-59.log]
   [testng] 04:06:59,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44652a62 - End of configuration.
   [testng] [2025-01-07 04:07:00,600] [pool-1-thread-9] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 04:07:00,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:07:00,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:00,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_04-07-00.log]
   [testng] 04:07:00,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa9cfbf - End of configuration.
   [testng] [2025-01-07 04:07:02,295] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 04:07:02,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:07:02,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:02,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_04-07-02.log]
   [testng] 04:07:02,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4203f11b - End of configuration.
   [testng] [2025-01-07 04:07:03,475] [pool-1-thread-7] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 04:07:03,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:07:03,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:03,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_04-07-03.log]
   [testng] 04:07:03,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601b169e - End of configuration.
   [testng] [2025-01-07 04:07:05,437] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 04:07:05,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:07:05,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:05,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_04-07-05.log]
   [testng] 04:07:05,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa3ea57 - End of configuration.
   [testng] [2025-01-07 04:07:06,763] [pool-1-thread-5] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 04:07:06,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:07:06,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:06,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_04-07-06.log]
   [testng] 04:07:06,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2000e8d5 - End of configuration.
   [testng] [2025-01-07 04:07:08,075] [pool-1-thread-4] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 04:07:08,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:07:08,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:08,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_04-07-08.log]
   [testng] 04:07:08,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5261684c - End of configuration.
   [testng] [2025-01-07 04:07:09,351] [pool-1-thread-3] Initializing /data/brian/Series002_z01.tif: 
   [testng] 04:07:09,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:07:09,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:09,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_04-07-09.log]
   [testng] 04:07:09,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cae361 - End of configuration.
   [testng] [2025-01-07 04:07:12,017] [pool-1-thread-2] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 04:07:12,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:07:12,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:07:12,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_04-07-12.log]
   [testng] 04:07:12,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fe64e41 - End of configuration.
   [testng] [2025-01-07 04:07:21,621] [pool-1-thread-7] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] [2025-01-07 04:07:26,796] [pool-1-thread-3] Initializing /data/primate/Leica_Image.tif: 
   [testng] [2025-01-07 04:07:28,271] [pool-1-thread-8] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 05:24:10,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:24:10,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:24:10,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_05-24-10.log]
   [testng] 05:24:10,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22d322f5 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 79 minutes 56 seconds
Finished: SUCCESS