Started by upstream project "BIOFORMATS-test-repo" build number 311
originally caused by:
 Started by upstream project "Trigger" build number 333
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12669943395349770188.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49362_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 04:18:05,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:18:05,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 04:18:05,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:18:05,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:18:05,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:18:05,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:18:05,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:18:05,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:18:05,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:18:05,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:18:05,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:18:05,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:18:05,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:18:05,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:18:05,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:18:05,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:18:05,366 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:18:05,366 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:18:05,366 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:18:05,366 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:18:05,366 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 04:18:05,367 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 04:18:05,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-07 04:18:05,377] [main] java.version = 11.0.16
   [testng] 04:18:05,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:18:05,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:18:05,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_04-18-05.log]
   [testng] 04:18:05,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2025-01-07 04:18:05,450] [main] testng.directory = /data
   [testng] [2025-01-07 04:18:05,451] [main] testng.configDirectory = /config
   [testng] [2025-01-07 04:18:05,466] [main] testng.multiplier = 1.0
   [testng] [2025-01-07 04:18:05,467] [main] testng.in-memory = false
   [testng] [2025-01-07 04:18:05,468] [main] testng.allow-missing = false
   [testng] [2025-01-07 04:18:05,468] [main] user.language = en
   [testng] [2025-01-07 04:18:05,468] [main] user.country = ${user.country}
   [testng] [2025-01-07 04:18:05,468] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-07 04:18:21,958] [main] ----------------------------------------
   [testng] [2025-01-07 04:18:21,958] [main] Total files: 23
   [testng] [2025-01-07 04:18:21,959] [main] Scan time: 16.49 s (716 ms/file)
   [testng] [2025-01-07 04:18:21,959] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-07 04:19:01,845] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] 04:19:01,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:19:01,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:01,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_04-19-01.log]
   [testng] 04:19:01,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46d68088 - End of configuration.
   [testng] [2025-01-07 04:19:02,922] [pool-1-thread-12] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] 04:19:02,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:19:02,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:02,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_04-19-02.log]
   [testng] 04:19:02,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d70d25d - End of configuration.
   [testng] [2025-01-07 04:19:04,408] [pool-1-thread-11] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 04:19:04,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:19:04,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:04,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_04-19-04.log]
   [testng] 04:19:04,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3696d101 - End of configuration.
   [testng] [2025-01-07 04:19:05,102] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 04:19:05,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:19:05,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:05,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_04-19-05.log]
   [testng] 04:19:05,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26a179ad - End of configuration.
   [testng] [2025-01-07 04:19:05,855] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] 04:19:05,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:19:05,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:05,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_04-19-05.log]
   [testng] 04:19:05,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7f9ae8 - End of configuration.
   [testng] [2025-01-07 04:19:08,528] [pool-1-thread-8] Initializing /data/public/NIH/minimal.nii: 
   [testng] 04:19:08,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:19:08,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:08,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_04-19-08.log]
   [testng] 04:19:08,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ecc0a31 - End of configuration.
   [testng] [2025-01-07 04:19:09,218] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] 04:19:09,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:19:09,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:09,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_04-19-09.log]
   [testng] 04:19:09,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad1887b - End of configuration.
   [testng] [2025-01-07 04:19:10,494] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] 04:19:10,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:19:10,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:10,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_04-19-10.log]
   [testng] 04:19:10,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c618f3c - End of configuration.
   [testng] [2025-01-07 04:19:11,246] [pool-1-thread-5] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 04:19:11,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:19:11,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:11,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_04-19-11.log]
   [testng] 04:19:11,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe6bb8d - End of configuration.
   [testng] [2025-01-07 04:19:13,328] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 04:19:13,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:19:13,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:13,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_04-19-13.log]
   [testng] 04:19:13,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64b378f1 - End of configuration.
   [testng] [2025-01-07 04:19:14,381] [pool-1-thread-3] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] 04:19:14,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:19:14,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:14,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_04-19-14.log]
   [testng] 04:19:14,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453e2ce0 - End of configuration.
   [testng] [2025-01-07 04:19:20,525] [pool-1-thread-2] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] 04:19:20,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:19:20,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:19:20,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_04-19-20.log]
   [testng] 04:19:20,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6dbbd7 - End of configuration.
   [testng] [2025-01-07 04:19:28,607] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] [2025-01-07 04:19:32,102] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] [2025-01-07 04:19:32,901] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] [2025-01-07 04:19:37,978] [pool-1-thread-2] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] [2025-01-07 04:19:38,757] [pool-1-thread-11] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] [2025-01-07 04:19:40,267] [pool-1-thread-1] Initializing /data/public/NIH/zstat1.nii: 
   [testng] [2025-01-07 04:19:41,070] [pool-1-thread-6] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] [2025-01-07 04:19:44,923] [pool-1-thread-7] Initializing /data/public/NIH/minimal.hdr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 20 seconds
Finished: SUCCESS