Started by upstream project "BIOFORMATS-test-repo" build number 312
originally caused by:
Started by upstream project "Trigger" build number 334
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16951407767792669921.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49389_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:22:33,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:33,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:22:33,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:33,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:33,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:33,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:33,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:33,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:33,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:33,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:33,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:33,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:33,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:33,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:33,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:33,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:33,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:33,877 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:33,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:33,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:33,877 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:22:33,878 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:22:33,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-08 00:22:33,888] [main] java.version = 17.0.2
[testng] 00:22:33,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:33,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:33,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_00-22-33.log]
[testng] 00:22:33,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-08 00:22:33,940] [main] testng.directory = /data
[testng] [2025-01-08 00:22:33,940] [main] testng.configDirectory = /config
[testng] [2025-01-08 00:22:33,951] [main] testng.multiplier = 1.0
[testng] [2025-01-08 00:22:33,952] [main] testng.in-memory = false
[testng] [2025-01-08 00:22:33,952] [main] testng.allow-missing = false
[testng] [2025-01-08 00:22:33,952] [main] user.language = en
[testng] [2025-01-08 00:22:33,952] [main] user.country = ${user.country}
[testng] [2025-01-08 00:22:33,952] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-08 00:22:56,514] [main] ----------------------------------------
[testng] [2025-01-08 00:22:56,514] [main] Total files: 320
[testng] [2025-01-08 00:22:56,514] [main] Scan time: 22.562 s (70 ms/file)
[testng] [2025-01-08 00:22:56,514] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 196 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-08 00:36:15,477] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] 00:36:15,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:36:15,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:15,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_00-36-15.log]
[testng] 00:36:15,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bfee458 - End of configuration.
[testng] [2025-01-08 00:36:15,842] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 00:36:15,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:36:15,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:15,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-08_00-36-15.log]
[testng] 00:36:15,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a610d4 - End of configuration.
[testng] [2025-01-08 00:36:16,325] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] 00:36:16,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:36:16,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:16,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-08_00-36-16.log]
[testng] 00:36:16,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15dd95cc - End of configuration.
[testng] [2025-01-08 00:36:17,830] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] 00:36:17,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:36:17,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:17,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-08_00-36-17.log]
[testng] 00:36:17,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28011c98 - End of configuration.
[testng] [2025-01-08 00:36:18,205] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] 00:36:18,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:36:18,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:18,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-08_00-36-18.log]
[testng] 00:36:18,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@744b5701 - End of configuration.
[testng] [2025-01-08 00:36:19,040] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] 00:36:19,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:36:19,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:19,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_00-36-19.log]
[testng] 00:36:19,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b409c40 - End of configuration.
[testng] [2025-01-08 00:36:19,378] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] 00:36:19,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:36:19,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:19,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_00-36-19.log]
[testng] 00:36:19,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbb42a6 - End of configuration.
[testng] [2025-01-08 00:36:19,684] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] 00:36:19,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:36:19,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:19,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_00-36-19.log]
[testng] 00:36:19,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b881bdb - End of configuration.
[testng] [2025-01-08 00:36:20,029] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] 00:36:20,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:36:20,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:20,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_00-36-20.log]
[testng] 00:36:20,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42777c68 - End of configuration.
[testng] [2025-01-08 00:37:12,410] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir:
[testng] 00:37:12,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:37:12,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:12,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_00-37-12.log]
[testng] 00:37:12,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ffdda19 - End of configuration.
[testng] [2025-01-08 00:37:17,542] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] 00:37:17,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:37:17,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:17,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_00-37-17.log]
[testng] 00:37:17,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9356ff - End of configuration.
[testng] [2025-01-08 00:37:18,099] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] 00:37:18,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:37:18,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:18,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_00-37-18.log]
[testng] 00:37:18,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8cba6c5 - End of configuration.
[testng] [2025-01-08 00:37:25,479] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2025-01-08 00:37:26,062] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2025-01-08 00:37:26,858] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2025-01-08 00:37:28,157] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2025-01-08 00:37:28,854] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2025-01-08 00:37:29,382] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2025-01-08 00:37:29,930] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2025-01-08 00:37:52,557] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2025-01-08 00:37:53,921] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2025-01-08 00:37:57,540] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2025-01-08 00:37:59,204] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2025-01-08 00:37:59,632] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2025-01-08 00:38:00,142] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2025-01-08 00:38:00,740] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2025-01-08 00:38:01,178] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2025-01-08 00:38:06,483] [pool-1-thread-6] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2025-01-08 00:38:08,300] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2025-01-08 00:38:08,714] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2025-01-08 00:38:09,352] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2025-01-08 00:38:09,890] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2025-01-08 00:38:12,213] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2025-01-08 00:38:13,290] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2025-01-08 00:38:14,265] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2025-01-08 00:38:19,005] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2025-01-08 00:38:19,675] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2025-01-08 00:38:21,141] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2025-01-08 00:38:23,367] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2025-01-08 00:38:23,887] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2025-01-08 00:38:24,106] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2025-01-08 00:38:25,064] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2025-01-08 00:38:25,701] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2025-01-08 00:38:26,087] [pool-1-thread-7] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2025-01-08 00:38:26,948] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2025-01-08 00:38:28,436] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2025-01-08 00:38:30,452] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2025-01-08 00:38:30,849] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2025-01-08 00:38:31,938] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2025-01-08 00:38:33,132] [pool-1-thread-10] Initializing /data/olympus/XYZt.oir:
[testng] [2025-01-08 00:38:36,012] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2025-01-08 00:38:36,589] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2025-01-08 00:38:37,470] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2025-01-08 00:38:38,027] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2025-01-08 00:38:39,936] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2025-01-08 00:38:40,614] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2025-01-08 00:38:40,939] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2025-01-08 00:38:44,286] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2025-01-08 00:38:46,266] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2025-01-08 00:38:48,449] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir:
[testng] [2025-01-08 00:38:48,828] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2025-01-08 00:38:50,119] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2025-01-08 00:38:51,367] [pool-1-thread-10] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2025-01-08 00:38:53,388] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2025-01-08 00:38:55,240] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2025-01-08 00:38:56,142] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2025-01-08 00:38:57,524] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2025-01-08 00:39:00,373] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2025-01-08 00:39:00,733] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2025-01-08 00:39:01,060] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2025-01-08 00:39:03,523] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2025-01-08 00:39:04,115] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2025-01-08 00:39:06,881] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2025-01-08 00:39:07,696] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2025-01-08 00:39:08,253] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2025-01-08 00:39:09,187] [pool-1-thread-8] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2025-01-08 00:39:12,902] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2025-01-08 00:39:13,310] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2025-01-08 00:39:14,259] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2025-01-08 00:39:14,868] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2025-01-08 00:39:15,514] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2025-01-08 00:39:16,685] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2025-01-08 00:39:17,465] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2025-01-08 00:39:19,960] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2025-01-08 00:39:22,134] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2025-01-08 00:39:23,565] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2025-01-08 00:39:25,083] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2025-01-08 00:39:34,720] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2025-01-08 00:39:35,723] [pool-1-thread-1] Initializing /data/qa-17270/stack1.oir:
[testng] [2025-01-08 00:39:38,792] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2025-01-08 00:39:40,421] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2025-01-08 00:39:40,971] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2025-01-08 00:39:43,367] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2025-01-08 00:39:45,943] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2025-01-08 00:39:47,360] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2025-01-08 00:39:50,125] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2025-01-08 00:39:55,334] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2025-01-08 00:39:56,761] [pool-1-thread-8] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir:
[testng] [2025-01-08 00:39:59,193] [pool-1-thread-3] Initializing /data/qa-17335/1.oir:
[testng] [2025-01-08 00:39:59,568] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2025-01-08 00:40:00,369] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2025-01-08 00:40:00,912] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2025-01-08 00:40:01,690] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2025-01-08 00:40:03,424] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2025-01-08 00:40:04,553] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2025-01-08 00:40:09,009] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2025-01-08 00:40:10,185] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif:
[testng] [2025-01-08 00:40:10,759] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2025-01-08 00:40:13,355] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2025-01-08 00:40:14,307] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2025-01-08 00:40:17,468] [pool-1-thread-8] Initializing /data/qa-17917/f10010.oir:
[testng] [2025-01-08 00:40:46,903] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2025-01-08 00:40:48,606] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2025-01-08 00:40:53,441] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2025-01-08 00:40:55,072] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2025-01-08 00:40:57,800] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2025-01-08 00:41:00,331] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2025-01-08 00:41:02,609] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2025-01-08 00:41:07,656] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2025-01-08 00:41:09,029] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2025-01-08 00:41:12,795] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2025-01-08 00:41:14,553] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2025-01-08 00:41:15,226] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2025-01-08 00:41:15,900] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2025-01-08 00:41:19,775] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2025-01-08 00:41:23,942] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2025-01-08 00:41:27,123] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2025-01-08 00:41:28,658] [pool-1-thread-7] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir:
[testng] [2025-01-08 00:41:29,743] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2025-01-08 00:41:31,064] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2025-01-08 00:41:41,699] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2025-01-08 00:41:42,620] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2025-01-08 00:41:44,816] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2025-01-08 00:41:54,041] [pool-1-thread-3] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir:
[testng] [2025-01-08 00:41:55,031] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2025-01-08 00:41:56,837] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2025-01-08 00:42:03,670] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2025-01-08 00:42:07,639] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2025-01-08 00:42:21,907] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2025-01-08 00:42:23,396] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2025-01-08 00:42:25,816] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2025-01-08 00:42:32,796] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2025-01-08 00:42:35,792] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2025-01-08 00:42:39,213] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2025-01-08 00:42:44,796] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2025-01-08 00:42:47,667] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2025-01-08 00:42:50,013] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2025-01-08 00:42:58,058] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2025-01-08 00:42:58,812] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2025-01-08 00:43:00,241] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2025-01-08 00:43:04,446] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2025-01-08 00:43:06,087] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2025-01-08 00:43:09,816] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2025-01-08 00:43:10,643] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2025-01-08 00:43:12,688] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2025-01-08 00:43:14,068] [pool-1-thread-12] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2025-01-08 00:43:17,249] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2025-01-08 00:43:19,693] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2025-01-08 00:43:21,756] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2025-01-08 00:43:22,739] [pool-1-thread-2] Initializing /data/olympus/XYZt.vsi:
[testng] [2025-01-08 00:43:24,567] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2025-01-08 00:43:25,397] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2025-01-08 00:43:26,072] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2025-01-08 00:43:26,885] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2025-01-08 00:43:27,454] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2025-01-08 00:43:28,066] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2025-01-08 00:43:30,006] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2025-01-08 00:43:31,117] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2025-01-08 00:43:33,512] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2025-01-08 00:43:34,018] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2025-01-08 00:43:35,594] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2025-01-08 00:43:36,545] [pool-1-thread-11] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2025-01-08 00:43:40,292] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2025-01-08 00:43:41,484] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2025-01-08 00:43:45,521] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2025-01-08 00:43:46,151] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2025-01-08 00:43:48,079] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2025-01-08 00:43:50,628] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2025-01-08 00:43:52,703] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2025-01-08 00:43:53,561] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2025-01-08 00:43:55,944] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2025-01-08 00:44:01,403] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2025-01-08 00:44:04,306] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir:
[testng] [2025-01-08 00:44:04,686] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2025-01-08 00:44:05,558] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2025-01-08 00:44:06,479] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2025-01-08 00:44:11,028] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2025-01-08 00:44:12,990] [pool-1-thread-1] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2025-01-08 00:44:15,344] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2025-01-08 00:44:16,087] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2025-01-08 00:44:18,227] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2025-01-08 00:44:21,832] [pool-1-thread-7] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir:
[testng] [2025-01-08 00:44:28,679] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2025-01-08 00:44:29,205] [pool-1-thread-10] Initializing /data/qa-17919/f10187.oir:
[testng] [2025-01-08 00:44:48,238] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2025-01-08 00:44:48,748] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10388, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 51 minutes 7 seconds
Finished: SUCCESS