Started by upstream project "BIOFORMATS-test-repo" build number 312
originally caused by:
Started by upstream project "Trigger" build number 334
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15349881094660806261.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49429_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:53:19,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:53:19,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:53:19,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:19,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:19,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:53:19,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:53:19,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:53:19,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:19,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:19,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:53:19,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:53:19,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:53:19,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:53:19,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:53:19,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:53:19,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:53:19,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:53:19,538 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:53:19,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:53:19,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:53:19,538 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:53:19,540 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:53:19,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-08 00:53:19,548] [main] java.version = 17.0.2
[testng] 00:53:19,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:53:19,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:19,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_00-53-19.log]
[testng] 00:53:19,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-08 00:53:19,594] [main] testng.directory = /data
[testng] [2025-01-08 00:53:19,594] [main] testng.configDirectory = /config
[testng] [2025-01-08 00:53:19,602] [main] testng.multiplier = 1.0
[testng] [2025-01-08 00:53:19,603] [main] testng.in-memory = false
[testng] [2025-01-08 00:53:19,603] [main] testng.allow-missing = false
[testng] [2025-01-08 00:53:19,603] [main] user.language = en
[testng] [2025-01-08 00:53:19,603] [main] user.country = ${user.country}
[testng] [2025-01-08 00:53:19,603] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-08 00:53:20,493] [main] ----------------------------------------
[testng] [2025-01-08 00:53:20,493] [main] Total files: 25
[testng] [2025-01-08 00:53:20,493] [main] Scan time: 0.89 s (35 ms/file)
[testng] [2025-01-08 00:53:20,493] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-08 00:53:24,906] [pool-1-thread-1] Initializing /data/misc/swlogo.pict:
[testng] 00:53:24,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:53:24,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:24,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_00-53-24.log]
[testng] 00:53:24,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48a3324a - End of configuration.
[testng] [2025-01-08 00:53:25,082] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT:
[testng] 00:53:25,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:53:25,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-08_00-53-25.log]
[testng] 00:53:25,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2ff85f - End of configuration.
[testng] [2025-01-08 00:53:25,203] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT:
[testng] 00:53:25,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:53:25,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-08_00-53-25.log]
[testng] 00:53:25,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401b79d0 - End of configuration.
[testng] [2025-01-08 00:53:25,272] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 00:53:25,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:53:25,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-08_00-53-25.log]
[testng] 00:53:25,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b31862d - End of configuration.
[testng] [2025-01-08 00:53:25,370] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict:
[testng] 00:53:25,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:53:25,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-08_00-53-25.log]
[testng] 00:53:25,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b2dc334 - End of configuration.
[testng] [2025-01-08 00:53:25,504] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 00:53:25,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:53:25,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_00-53-25.log]
[testng] 00:53:25,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319169cb - End of configuration.
[testng] [2025-01-08 00:53:25,609] [pool-1-thread-7] Initializing /data/jqd/32bit.pict:
[testng] 00:53:25,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:53:25,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_00-53-25.log]
[testng] 00:53:25,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48a44e - End of configuration.
[testng] [2025-01-08 00:53:25,684] [pool-1-thread-6] Initializing /data/brian/images/VENUS.pct:
[testng] 00:53:25,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:53:25,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_00-53-25.log]
[testng] 00:53:25,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration.
[testng] [2025-01-08 00:53:25,773] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict:
[testng] 00:53:25,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:53:25,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_00-53-25.log]
[testng] 00:53:25,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd022 - End of configuration.
[testng] [2025-01-08 00:53:25,841] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT:
[testng] 00:53:25,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:53:25,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_00-53-25.log]
[testng] 00:53:25,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21368e1c - End of configuration.
[testng] [2025-01-08 00:53:25,908] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 00:53:25,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:53:25,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:25,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_00-53-25.log]
[testng] 00:53:25,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed65e2 - End of configuration.
[testng] [2025-01-08 00:53:26,132] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 00:53:26,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:53:26,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:26,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_00-53-26.log]
[testng] 00:53:26,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6323a76a - End of configuration.
[testng] [2025-01-08 00:53:29,371] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2025-01-08 00:53:29,699] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2025-01-08 00:53:29,886] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT:
[testng] [2025-01-08 00:53:30,029] [pool-1-thread-12] Initializing /data/brian/images/BLK.PCT:
[testng] [2025-01-08 00:53:30,193] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2025-01-08 00:53:30,362] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT:
[testng] [2025-01-08 00:53:30,538] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2025-01-08 00:53:30,701] [pool-1-thread-6] Initializing /data/misc/planet.pict:
[testng] [2025-01-08 00:53:31,337] [pool-1-thread-7] Initializing /data/jqd/mire32.pict:
[testng] [2025-01-08 00:53:31,551] [pool-1-thread-8] Initializing /data/misc/planet2.pict:
[testng] [2025-01-08 00:53:31,745] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT:
[testng] [2025-01-08 00:53:32,208] [pool-1-thread-3] Initializing /data/misc/planet.png:
[testng] [2025-01-08 00:53:33,017] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS