Started by upstream project "BIOFORMATS-test-repo" build number 312
originally caused by:
Started by upstream project "Trigger" build number 334
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins7853896646134486638.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49473_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:00:18,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:00:18,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 03:00:18,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:00:18,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:00:18,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:00:18,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:00:18,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:00:18,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:00:18,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:00:18,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:00:18,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:00:18,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:00:18,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:00:18,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:00:18,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:00:18,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:00:18,608 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:00:18,608 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:00:18,608 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:00:18,608 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:00:18,608 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 03:00:18,609 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 03:00:18,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-08 03:00:18,618] [main] java.version = 17.0.2
[testng] 03:00:18,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:00:18,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:18,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_03-00-18.log]
[testng] 03:00:18,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2025-01-08 03:00:18,661] [main] testng.directory = /data
[testng] [2025-01-08 03:00:18,661] [main] testng.configDirectory = /config
[testng] [2025-01-08 03:00:18,669] [main] testng.multiplier = 1.0
[testng] [2025-01-08 03:00:18,670] [main] testng.in-memory = false
[testng] [2025-01-08 03:00:18,670] [main] testng.allow-missing = false
[testng] [2025-01-08 03:00:18,670] [main] user.language = en
[testng] [2025-01-08 03:00:18,670] [main] user.country = ${user.country}
[testng] [2025-01-08 03:00:18,670] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-08 03:00:19,095] [main] ----------------------------------------
[testng] [2025-01-08 03:00:19,095] [main] Total files: 19
[testng] [2025-01-08 03:00:19,095] [main] Scan time: 0.425 s (22 ms/file)
[testng] [2025-01-08 03:00:19,095] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-08 03:00:26,069] [pool-1-thread-1] Initializing /data/samples/200R PICT0002.MRW:
[testng] 03:00:26,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:00:26,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:26,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_03-00-26.log]
[testng] 03:00:26,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a17e913 - End of configuration.
[testng] [2025-01-08 03:00:26,324] [pool-1-thread-12] Initializing /data/samples/400R PICT0003.MRW:
[testng] 03:00:26,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:00:26,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:26,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-08_03-00-26.log]
[testng] 03:00:26,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391c921b - End of configuration.
[testng] [2025-01-08 03:00:26,647] [pool-1-thread-11] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 03:00:26,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:00:26,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:26,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-08_03-00-26.log]
[testng] 03:00:26,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20fc487e - End of configuration.
[testng] [2025-01-08 03:00:26,902] [pool-1-thread-10] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 03:00:26,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:00:26,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:26,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-08_03-00-26.log]
[testng] 03:00:26,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae88e46 - End of configuration.
[testng] [2025-01-08 03:00:27,216] [pool-1-thread-9] Initializing /data/samples/100R PICT0001.MRW:
[testng] 03:00:27,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:00:27,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:27,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-08_03-00-27.log]
[testng] 03:00:27,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145d8751 - End of configuration.
[testng] [2025-01-08 03:00:27,550] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 03:00:27,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:00:27,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:27,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_03-00-27.log]
[testng] 03:00:27,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a27bb9 - End of configuration.
[testng] [2025-01-08 03:00:27,870] [pool-1-thread-7] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 03:00:27,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:00:27,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:27,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_03-00-27.log]
[testng] 03:00:27,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dcb3b32 - End of configuration.
[testng] [2025-01-08 03:00:28,213] [pool-1-thread-6] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 03:00:28,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:00:28,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:28,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_03-00-28.log]
[testng] 03:00:28,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c075f9 - End of configuration.
[testng] [2025-01-08 03:00:28,545] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] 03:00:28,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:00:28,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:28,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_03-00-28.log]
[testng] 03:00:28,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ee3fec7 - End of configuration.
[testng] [2025-01-08 03:00:28,856] [pool-1-thread-4] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 03:00:28,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:00:28,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:28,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_03-00-28.log]
[testng] 03:00:28,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af7d626 - End of configuration.
[testng] [2025-01-08 03:00:29,160] [pool-1-thread-3] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 03:00:29,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:00:29,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:29,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_03-00-29.log]
[testng] 03:00:29,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33d2317d - End of configuration.
[testng] [2025-01-08 03:00:29,459] [pool-1-thread-2] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 03:00:29,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:00:29,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:29,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_03-00-29.log]
[testng] 03:00:29,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b4fb4dd - End of configuration.
[testng] [2025-01-08 03:00:37,240] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2025-01-08 03:00:37,538] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2025-01-08 03:00:37,861] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2025-01-08 03:00:38,123] [pool-1-thread-11] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2025-01-08 03:00:38,390] [pool-1-thread-4] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2025-01-08 03:00:38,662] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2025-01-08 03:00:38,922] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS