Started by upstream project "BIOFORMATS-test-repo" build number 313
originally caused by:
Started by upstream project "Trigger" build number 335
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12517892640198459209.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49581_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:38:18,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:38:18,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 01:38:18,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:38:18,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:38:18,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:38:18,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:38:18,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:38:18,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:38:18,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:38:18,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:38:18,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:38:18,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:38:18,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:38:18,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:38:18,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:38:18,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:38:18,345 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:38:18,345 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:38:18,345 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:38:18,346 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:38:18,346 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 01:38:18,346 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 01:38:18,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-09 01:38:18,355] [main] java.version = 21
[testng] 01:38:18,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:38:18,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:18,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_01-38-18.log]
[testng] 01:38:18,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2025-01-09 01:38:18,400] [main] testng.directory = /data
[testng] [2025-01-09 01:38:18,400] [main] testng.configDirectory = /config
[testng] [2025-01-09 01:38:18,409] [main] testng.multiplier = 1.0
[testng] [2025-01-09 01:38:18,409] [main] testng.in-memory = false
[testng] [2025-01-09 01:38:18,409] [main] testng.allow-missing = false
[testng] [2025-01-09 01:38:18,409] [main] user.language = en
[testng] [2025-01-09 01:38:18,409] [main] user.country = ${user.country}
[testng] [2025-01-09 01:38:18,410] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-09 01:38:18,920] [main] ----------------------------------------
[testng] [2025-01-09 01:38:18,920] [main] Total files: 21
[testng] [2025-01-09 01:38:18,920] [main] Scan time: 0.51 s (24 ms/file)
[testng] [2025-01-09 01:38:18,921] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-09 01:38:31,536] [pool-1-thread-1] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:38:31,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:38:31,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:31,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_01-38-31.log]
[testng] 01:38:31,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f005a5 - End of configuration.
[testng] [2025-01-09 01:38:31,669] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:38:31,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:38:31,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:31,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_01-38-31.log]
[testng] 01:38:31,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682c38c2 - End of configuration.
[testng] [2025-01-09 01:38:31,796] [pool-1-thread-11] Initializing /data/samples/XING_T16.TGA:
[testng] 01:38:31,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:38:31,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:31,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_01-38-31.log]
[testng] 01:38:31,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e014ce - End of configuration.
[testng] [2025-01-09 01:38:31,931] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:38:31,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:38:31,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:31,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_01-38-31.log]
[testng] 01:38:31,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3948f91c - End of configuration.
[testng] [2025-01-09 01:38:32,428] [pool-1-thread-9] Initializing /data/samples/CTC24.TGA:
[testng] 01:38:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:38:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:32,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_01-38-32.log]
[testng] 01:38:32,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629bcc5b - End of configuration.
[testng] [2025-01-09 01:38:32,760] [pool-1-thread-8] Initializing /data/samples/XING_T24.TGA:
[testng] 01:38:32,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:38:32,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:32,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_01-38-32.log]
[testng] 01:38:32,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141e7d0c - End of configuration.
[testng] [2025-01-09 01:38:33,105] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA:
[testng] 01:38:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:38:33,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_01-38-33.log]
[testng] 01:38:33,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8ecd7a - End of configuration.
[testng] [2025-01-09 01:38:33,407] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 01:38:33,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:38:33,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_01-38-33.log]
[testng] 01:38:33,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e26149a - End of configuration.
[testng] [2025-01-09 01:38:33,536] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] 01:38:33,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:38:33,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_01-38-33.log]
[testng] 01:38:33,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5a5bd4 - End of configuration.
[testng] [2025-01-09 01:38:33,636] [pool-1-thread-4] Initializing /data/samples/UTC16.TGA:
[testng] 01:38:33,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:38:33,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_01-38-33.log]
[testng] 01:38:33,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2367fac4 - End of configuration.
[testng] [2025-01-09 01:38:33,751] [pool-1-thread-3] Initializing /data/samples/UCM8.TGA:
[testng] 01:38:33,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:38:33,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_01-38-33.log]
[testng] 01:38:33,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc0ef37 - End of configuration.
[testng] [2025-01-09 01:38:33,960] [pool-1-thread-2] Initializing /data/samples/XING_B32.TGA:
[testng] 01:38:33,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:38:33,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:33,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_01-38-33.log]
[testng] 01:38:33,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d30184 - End of configuration.
[testng] [2025-01-09 01:38:38,739] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA:
[testng] [2025-01-09 01:38:39,193] [pool-1-thread-1] Initializing /data/samples/XING_B24.TGA:
[testng] [2025-01-09 01:38:40,101] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA:
[testng] [2025-01-09 01:38:40,496] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA:
[testng] [2025-01-09 01:38:40,687] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] [2025-01-09 01:38:40,932] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA:
[testng] [2025-01-09 01:38:41,860] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2025-01-09 01:38:42,576] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] [2025-01-09 01:38:42,726] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS