Started by upstream project "BIOFORMATS-test-repo" build number 313 originally caused by: Started by upstream project "Trigger" build number 335 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7588652334996760986.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49634_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:01:21,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:01:21,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:01:21,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:01:21,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:01:21,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:01:21,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:01:21,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:01:21,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:01:21,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:01:21,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:01:21,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:01:21,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:01:21,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:01:21,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:01:22,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:01:22,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:01:22,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:01:22,010 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:01:22,010 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:01:22,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:01:22,011 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:01:22,012 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:01:22,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-09 03:01:22,022] [main] java.version = 21 [testng] 03:01:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:01:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:22,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_03-01-22.log] [testng] 03:01:22,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-09 03:01:22,072] [main] testng.directory = /data [testng] [2025-01-09 03:01:22,072] [main] testng.configDirectory = /config [testng] [2025-01-09 03:01:22,081] [main] testng.multiplier = 1.0 [testng] [2025-01-09 03:01:22,081] [main] testng.in-memory = false [testng] [2025-01-09 03:01:22,081] [main] testng.allow-missing = false [testng] [2025-01-09 03:01:22,081] [main] user.language = en [testng] [2025-01-09 03:01:22,081] [main] user.country = ${user.country} [testng] [2025-01-09 03:01:22,082] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-09 03:01:45,917] [main] ---------------------------------------- [testng] [2025-01-09 03:01:45,918] [main] Total files: 19 [testng] [2025-01-09 03:01:45,918] [main] Scan time: 23.835 s (1254 ms/file) [testng] [2025-01-09 03:01:45,918] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-09 03:02:10,689] [pool-1-thread-1] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 03:02:10,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:02:10,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:10,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_03-02-10.log] [testng] 03:02:10,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e72d3b - End of configuration. [testng] [2025-01-09 03:02:11,502] [pool-1-thread-12] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 03:02:11,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:02:11,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:11,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_03-02-11.log] [testng] 03:02:11,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143761f9 - End of configuration. [testng] [2025-01-09 03:02:12,420] [pool-1-thread-11] Initializing /data/todd/movement-1.htm: [testng] 03:02:12,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:02:12,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:12,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_03-02-12.log] [testng] 03:02:12,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dff74a6 - End of configuration. [testng] [2025-01-09 03:02:13,385] [pool-1-thread-10] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 03:02:13,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:02:13,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:13,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_03-02-13.log] [testng] 03:02:13,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57749fab - End of configuration. [testng] [2025-01-09 03:02:14,600] [pool-1-thread-9] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 03:02:14,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:02:14,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:14,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_03-02-14.log] [testng] 03:02:14,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ac6e13 - End of configuration. [testng] [2025-01-09 03:02:15,916] [pool-1-thread-8] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 03:02:15,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:02:15,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:15,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_03-02-15.log] [testng] 03:02:15,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4efa30 - End of configuration. [testng] [2025-01-09 03:02:16,932] [pool-1-thread-7] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 03:02:16,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:02:16,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:16,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_03-02-16.log] [testng] 03:02:16,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be85835 - End of configuration. [testng] [2025-01-09 03:02:18,000] [pool-1-thread-6] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 03:02:18,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:02:18,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:18,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_03-02-18.log] [testng] 03:02:18,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb6f6c9 - End of configuration. [testng] [2025-01-09 03:02:18,889] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 03:02:18,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:02:18,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:18,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_03-02-18.log] [testng] 03:02:18,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2130687b - End of configuration. [testng] [2025-01-09 03:02:19,757] [pool-1-thread-4] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 03:02:19,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:02:19,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:19,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_03-02-19.log] [testng] 03:02:19,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53516a5c - End of configuration. [testng] [2025-01-09 03:02:20,592] [pool-1-thread-3] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 03:02:20,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:02:20,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:20,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_03-02-20.log] [testng] 03:02:20,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25df1e1f - End of configuration. [testng] [2025-01-09 03:02:21,916] [pool-1-thread-2] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 03:02:21,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:02:21,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:02:21,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_03-02-21.log] [testng] 03:02:21,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c51fcfb - End of configuration. [testng] [2025-01-09 03:03:01,737] [pool-1-thread-11] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] [2025-01-09 03:03:04,529] [pool-1-thread-7] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] [2025-01-09 03:03:10,316] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] [2025-01-09 03:03:30,167] [pool-1-thread-4] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2025-01-09 03:03:37,116] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] [2025-01-09 03:04:00,519] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 minutes 16 seconds Finished: SUCCESS