Started by upstream project "BIOFORMATS-test-repo" build number 313
originally caused by:
Started by upstream project "Trigger" build number 335
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3329349329337824869.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49676_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:33:47,022 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:33:47,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 04:33:47,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:33:47,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:33:47,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:33:47,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:33:47,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:33:47,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:33:47,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:33:47,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:33:47,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:33:47,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:33:47,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:33:47,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:33:47,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:33:47,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:33:47,222 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:33:47,222 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:33:47,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:33:47,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:33:47,223 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 04:33:47,224 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 04:33:47,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-01-09 04:33:47,235] [main] java.version = 21
[testng] 04:33:47,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:33:47,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:47,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_04-33-47.log]
[testng] 04:33:47,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2025-01-09 04:33:47,292] [main] testng.directory = /data
[testng] [2025-01-09 04:33:47,292] [main] testng.configDirectory = /config
[testng] [2025-01-09 04:33:47,304] [main] testng.multiplier = 1.0
[testng] [2025-01-09 04:33:47,305] [main] testng.in-memory = false
[testng] [2025-01-09 04:33:47,305] [main] testng.allow-missing = false
[testng] [2025-01-09 04:33:47,305] [main] user.language = en
[testng] [2025-01-09 04:33:47,305] [main] user.country = ${user.country}
[testng] [2025-01-09 04:33:47,305] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-01-09 04:33:48,156] [main] ----------------------------------------
[testng] [2025-01-09 04:33:48,157] [main] Total files: 18
[testng] [2025-01-09 04:33:48,157] [main] Scan time: 0.851 s (47 ms/file)
[testng] [2025-01-09 04:33:48,157] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-01-09 04:33:59,380] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 04:33:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:33:59,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:59,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_04-33-59.log]
[testng] 04:33:59,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e45ff7 - End of configuration.
[testng] [2025-01-09 04:33:59,679] [pool-1-thread-12] Initializing /data/misc/smilie.psd:
[testng] 04:33:59,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:33:59,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:59,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_04-33-59.log]
[testng] 04:33:59,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ca8ff4 - End of configuration.
[testng] [2025-01-09 04:33:59,969] [pool-1-thread-11] Initializing /data/misc/venus_composite.psd:
[testng] 04:33:59,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:33:59,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:59,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_04-33-59.log]
[testng] 04:33:59,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf1d6ac - End of configuration.
[testng] [2025-01-09 04:34:00,252] [pool-1-thread-10] Initializing /data/cris/house.tif:
[testng] 04:34:00,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:34:00,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:00,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_04-34-00.log]
[testng] 04:34:00,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24394eef - End of configuration.
[testng] [2025-01-09 04:34:01,558] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd:
[testng] 04:34:01,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:34:01,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:01,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_04-34-01.log]
[testng] 04:34:01,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@667221c1 - End of configuration.
[testng] [2025-01-09 04:34:01,937] [pool-1-thread-8] Initializing /data/ascb/423.psd:
[testng] 04:34:01,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:34:01,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:01,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_04-34-01.log]
[testng] 04:34:01,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649e6a1b - End of configuration.
[testng] [2025-01-09 04:34:02,265] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 04:34:02,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:34:02,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:02,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_04-34-02.log]
[testng] 04:34:02,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31609622 - End of configuration.
[testng] [2025-01-09 04:34:03,326] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 04:34:03,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:34:03,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:03,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_04-34-03.log]
[testng] 04:34:03,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ac26724 - End of configuration.
[testng] [2025-01-09 04:34:03,688] [pool-1-thread-5] Initializing /data/misc/glossy_buttons.psd:
[testng] 04:34:03,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:34:03,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:03,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_04-34-03.log]
[testng] 04:34:03,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6487c012 - End of configuration.
[testng] [2025-01-09 04:34:03,998] [pool-1-thread-4] Initializing /data/ascb/607x.psd:
[testng] 04:34:03,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:34:03,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:03,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_04-34-03.log]
[testng] 04:34:04,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fa4057 - End of configuration.
[testng] [2025-01-09 04:34:04,390] [pool-1-thread-3] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 04:34:04,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:34:04,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:04,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_04-34-04.log]
[testng] 04:34:04,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b2da90 - End of configuration.
[testng] [2025-01-09 04:34:04,996] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 04:34:04,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:34:04,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:04,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_04-34-04.log]
[testng] 04:34:04,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c74212c - End of configuration.
[testng] [2025-01-09 04:34:11,592] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] [2025-01-09 04:34:11,923] [pool-1-thread-12] Initializing /data/misc/glossy_orbs.psd:
[testng] [2025-01-09 04:34:12,232] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2025-01-09 04:34:12,534] [pool-1-thread-1] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] [2025-01-09 04:34:12,813] [pool-1-thread-6] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] [2025-01-09 04:34:13,189] [pool-1-thread-2] Initializing /data/big-images/8kx8k.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 47 seconds
Finished: SUCCESS