Started by upstream project "BIOFORMATS-test-repo" build number 37
originally caused by:
Started by upstream project "Trigger" build number 42
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins18224561856553994644.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5072_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:19:22,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:19:22,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:19:22,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:19:22,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:19:22,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:19:22,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:19:22,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:19:22,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:19:22,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:19:22,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:19:22,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:19:22,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:19:22,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:19:22,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:19:22,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:19:22,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:19:22,676 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:19:22,676 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:19:22,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:19:22,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:19:22,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:19:22,677 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:19:22,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-18 01:19:22,686] [main] java.version = 21
[testng] 01:19:22,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:19:22,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:22,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-18_01-19-22.log]
[testng] 01:19:22,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-04-18 01:19:22,734] [main] testng.directory = /data
[testng] [2024-04-18 01:19:22,734] [main] testng.configDirectory = /config
[testng] [2024-04-18 01:19:22,742] [main] testng.multiplier = 1.0
[testng] [2024-04-18 01:19:22,743] [main] testng.in-memory = false
[testng] [2024-04-18 01:19:22,743] [main] testng.allow-missing = false
[testng] [2024-04-18 01:19:22,743] [main] user.language = en
[testng] [2024-04-18 01:19:22,743] [main] user.country = ${user.country}
[testng] [2024-04-18 01:19:22,743] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-18 01:19:23,681] [main] ----------------------------------------
[testng] [2024-04-18 01:19:23,681] [main] Total files: 21
[testng] [2024-04-18 01:19:23,681] [main] Scan time: 0.938 s (44 ms/file)
[testng] [2024-04-18 01:19:23,682] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-18 01:19:25,913] [pool-1-thread-1] Initializing /data/stefan/001_q11.txt:
[testng] 01:19:25,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:19:25,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:25,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-18_01-19-25.log]
[testng] 01:19:25,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca3a81a - End of configuration.
[testng] [2024-04-18 01:19:25,999] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 01:19:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:19:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-18_01-19-26.log]
[testng] 01:19:26,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff5a022 - End of configuration.
[testng] [2024-04-18 01:19:26,054] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt:
[testng] 01:19:26,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:19:26,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-18_01-19-26.log]
[testng] 01:19:26,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a48de - End of configuration.
[testng] [2024-04-18 01:19:26,096] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt:
[testng] 01:19:26,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:19:26,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-18_01-19-26.log]
[testng] 01:19:26,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3090b13b - End of configuration.
[testng] [2024-04-18 01:19:26,183] [pool-1-thread-9] Initializing /data/stefan/001_q01.txt:
[testng] 01:19:26,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:19:26,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-18_01-19-26.log]
[testng] 01:19:26,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30825961 - End of configuration.
[testng] [2024-04-18 01:19:26,212] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt:
[testng] 01:19:26,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:19:26,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-18_01-19-26.log]
[testng] 01:19:26,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dcc32a2 - End of configuration.
[testng] [2024-04-18 01:19:26,252] [pool-1-thread-7] Initializing /data/stefan/001_q07.txt:
[testng] 01:19:26,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:19:26,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-18_01-19-26.log]
[testng] 01:19:26,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9bd321 - End of configuration.
[testng] [2024-04-18 01:19:26,318] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt:
[testng] 01:19:26,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:19:26,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-18_01-19-26.log]
[testng] 01:19:26,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19579e85 - End of configuration.
[testng] [2024-04-18 01:19:26,345] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 01:19:26,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:19:26,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-18_01-19-26.log]
[testng] 01:19:26,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4b3f3 - End of configuration.
[testng] [2024-04-18 01:19:26,409] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt:
[testng] 01:19:26,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:19:26,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-18_01-19-26.log]
[testng] 01:19:26,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1365fefb - End of configuration.
[testng] [2024-04-18 01:19:26,481] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt:
[testng] 01:19:26,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:19:26,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-18_01-19-26.log]
[testng] 01:19:26,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f93694d - End of configuration.
[testng] [2024-04-18 01:19:26,568] [pool-1-thread-2] Initializing /data/stefan/001_q13.txt:
[testng] 01:19:26,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:19:26,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:26,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-18_01-19-26.log]
[testng] 01:19:26,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34c3786f - End of configuration.
[testng] [2024-04-18 01:19:29,444] [pool-1-thread-9] Initializing /data/stefan/001_q06.txt:
[testng] [2024-04-18 01:19:29,469] [pool-1-thread-12] Initializing /data/stefan/001_q08.txt:
[testng] [2024-04-18 01:19:29,535] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt:
[testng] [2024-04-18 01:19:29,575] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt:
[testng] [2024-04-18 01:19:29,642] [pool-1-thread-7] Initializing /data/stefan/001_q05.txt:
[testng] [2024-04-18 01:19:29,670] [pool-1-thread-4] Initializing /data/stefan/001_q02.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS