Started by upstream project "BIOFORMATS-test-repo" build number 37
originally caused by:
 Started by upstream project "Trigger" build number 42
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1346872799159107888.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5083_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:21:27,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:21:27,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 01:21:27,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:27,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:27,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:21:27,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:21:27,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:21:27,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:27,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:27,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:21:27,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:21:27,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:21:27,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:21:27,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:21:27,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:21:27,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:21:27,630 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:21:27,630 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:21:27,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:21:27,631 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:21:27,631 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 01:21:27,632 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 01:21:27,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-18 01:21:27,647] [main] java.version = 21
   [testng] 01:21:27,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:21:27,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:27,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-18_01-21-27.log]
   [testng] 01:21:27,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-04-18 01:21:27,707] [main] testng.directory = /data
   [testng] [2024-04-18 01:21:27,707] [main] testng.configDirectory = /config
   [testng] [2024-04-18 01:21:27,718] [main] testng.multiplier = 1.0
   [testng] [2024-04-18 01:21:27,719] [main] testng.in-memory = false
   [testng] [2024-04-18 01:21:27,719] [main] testng.allow-missing = false
   [testng] [2024-04-18 01:21:27,719] [main] user.language = en
   [testng] [2024-04-18 01:21:27,719] [main] user.country = ${user.country}
   [testng] [2024-04-18 01:21:27,720] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-18 01:21:41,137] [main] ----------------------------------------
   [testng] [2024-04-18 01:21:41,138] [main] Total files: 226
   [testng] [2024-04-18 01:21:41,138] [main] Scan time: 13.417 s (59 ms/file)
   [testng] [2024-04-18 01:21:41,138] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 28 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-18 01:21:48,567] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: 
   [testng] 01:21:48,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:21:48,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-18_01-21-48.log]
   [testng] 01:21:48,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6075d35e - End of configuration.
   [testng] [2024-04-18 01:21:48,592] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL: 
   [testng] 01:21:48,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:21:48,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-18_01-21-48.log]
   [testng] 01:21:48,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d2a43a - End of configuration.
   [testng] [2024-04-18 01:21:48,602] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL: 
   [testng] 01:21:48,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:21:48,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-18_01-21-48.log]
   [testng] 01:21:48,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b66b4 - End of configuration.
   [testng] [2024-04-18 01:21:48,614] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: 
   [testng] 01:21:48,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:21:48,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-18_01-21-48.log]
   [testng] 01:21:48,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ddb6886 - End of configuration.
   [testng] [2024-04-18 01:21:48,624] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: 
   [testng] 01:21:48,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:21:48,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-18_01-21-48.log]
   [testng] 01:21:48,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e9e934 - End of configuration.
   [testng] [2024-04-18 01:21:48,758] [pool-1-thread-8] Initializing /data/iplab/Blend_Dapi.IPL: 
   [testng] 01:21:48,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:21:48,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-18_01-21-48.log]
   [testng] 01:21:48,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8e3087 - End of configuration.
   [testng] [2024-04-18 01:21:48,768] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif: 
   [testng] 01:21:48,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:21:48,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-18_01-21-48.log]
   [testng] 01:21:48,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4934f937 - End of configuration.
   [testng] [2024-04-18 01:21:48,803] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: 
   [testng] 01:21:48,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:21:48,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-18_01-21-48.log]
   [testng] 01:21:48,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a0187a9 - End of configuration.
   [testng] [2024-04-18 01:21:48,817] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.tif: 
   [testng] 01:21:48,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:21:48,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-18_01-21-48.log]
   [testng] 01:21:48,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7639e7f0 - End of configuration.
   [testng] [2024-04-18 01:21:48,862] [pool-1-thread-4] Initializing /data/iplab/Blend_Fitc.IPL: 
   [testng] 01:21:48,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:21:48,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-18_01-21-48.log]
   [testng] 01:21:48,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a2e67a - End of configuration.
   [testng] [2024-04-18 01:21:48,870] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif: 
   [testng] 01:21:48,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:21:48,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-18_01-21-48.log]
   [testng] 01:21:48,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ebcaf6c - End of configuration.
   [testng] [2024-04-18 01:21:48,919] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF: 
   [testng] 01:21:48,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:21:48,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:48,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-18_01-21-48.log]
   [testng] 01:21:48,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d21b2c3 - End of configuration.
   [testng] [2024-04-18 01:21:50,957] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: 
   [testng] [2024-04-18 01:21:50,967] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: 
   [testng] [2024-04-18 01:21:51,029] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: 
   [testng] [2024-04-18 01:21:51,038] [pool-1-thread-7] Initializing /data/fluoview/Sample_ThreeCH.TIF: 
   [testng] [2024-04-18 01:21:51,078] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL: 
   [testng] [2024-04-18 01:21:51,084] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF: 
   [testng] [2024-04-18 01:21:51,113] [pool-1-thread-4] Initializing /data/fluoview/Sample_TwoCH.TIF: 
   [testng] [2024-04-18 01:21:51,152] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi: 
   [testng] [2024-04-18 01:21:51,164] [pool-1-thread-2] Initializing /data/iplab/10x Blood and Bacteria.IPL: 
   [testng] [2024-04-18 01:21:51,171] [pool-1-thread-1] Initializing /data/iplab/3t3 Cell.IPL: 
   [testng] [2024-04-18 01:21:51,178] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYTCh.tif: 
   [testng] [2024-04-18 01:21:51,462] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL: 
   [testng] [2024-04-18 01:21:51,472] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: 
   [testng] [2024-04-18 01:21:51,578] [pool-1-thread-3] Initializing /data/iplab/Chromosomes.IPL: 
   [testng] [2024-04-18 01:21:51,609] [pool-1-thread-10] Initializing /data/fluoview/Sample_XT.tif: 
   [testng] [2024-04-18 01:21:51,746] [pool-1-thread-2] Initializing /data/iplab/Color Histology.IPL: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1484, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS