Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins2089032477729753275.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5235_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:06:14,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:06:14,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:06:14,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:06:14,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:06:14,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:06:14,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:06:14,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:06:14,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:06:14,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:06:14,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:06:14,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:06:14,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:06:14,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:06:14,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:06:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:06:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:06:14,516 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:06:14,517 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:06:14,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:06:14,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:06:14,517 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:06:14,518 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:06:14,518 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 315 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:06:14,532] [main] java.version = 1.8.0_342 [testng] 09:06:14,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:06:14,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:14,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-06-14.log] [testng] 09:06:14,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:06:14,590] [main] testng.directory = /data [testng] [2024-04-19 09:06:14,590] [main] testng.configDirectory = /config [testng] [2024-04-19 09:06:14,605] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:06:14,605] [main] testng.in-memory = false [testng] [2024-04-19 09:06:14,605] [main] testng.allow-missing = false [testng] [2024-04-19 09:06:14,605] [main] user.language = en [testng] [2024-04-19 09:06:14,605] [main] user.country = ${user.country} [testng] [2024-04-19 09:06:14,605] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:06:15,114] [main] ---------------------------------------- [testng] [2024-04-19 09:06:15,114] [main] Total files: 21 [testng] [2024-04-19 09:06:15,114] [main] Scan time: 0.509 s (24 ms/file) [testng] [2024-04-19 09:06:15,114] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:06:16,499] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 09:06:16,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:06:16,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-06-16.log] [testng] 09:06:16,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfec051 - End of configuration. [testng] [2024-04-19 09:06:16,581] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 09:06:16,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:06:16,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-06-16.log] [testng] 09:06:16,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a9114f7 - End of configuration. [testng] [2024-04-19 09:06:16,612] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 09:06:16,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:06:16,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-06-16.log] [testng] 09:06:16,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f61bc0e - End of configuration. [testng] [2024-04-19 09:06:16,640] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 09:06:16,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:06:16,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-06-16.log] [testng] 09:06:16,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@433fbc34 - End of configuration. [testng] [2024-04-19 09:06:16,667] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 09:06:16,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:06:16,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-06-16.log] [testng] 09:06:16,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@617d4ac4 - End of configuration. [testng] [2024-04-19 09:06:16,712] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 09:06:16,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:06:16,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-06-16.log] [testng] 09:06:16,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705bf152 - End of configuration. [testng] [2024-04-19 09:06:16,733] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 09:06:16,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:06:16,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-06-16.log] [testng] 09:06:16,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191f95f - End of configuration. [testng] [2024-04-19 09:06:16,760] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 09:06:16,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:06:16,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-06-16.log] [testng] 09:06:16,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63341678 - End of configuration. [testng] [2024-04-19 09:06:16,785] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 09:06:16,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:06:16,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-06-16.log] [testng] 09:06:16,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276f289d - End of configuration. [testng] [2024-04-19 09:06:16,800] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 09:06:16,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:06:16,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-06-16.log] [testng] 09:06:16,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8de943 - End of configuration. [testng] [2024-04-19 09:06:16,814] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 09:06:16,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:06:16,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-06-16.log] [testng] 09:06:16,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3698fb4a - End of configuration. [testng] [2024-04-19 09:06:16,829] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 09:06:16,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:06:16,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:06:16,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-06-16.log] [testng] 09:06:16,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3793f155 - End of configuration. [testng] [2024-04-19 09:06:19,579] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-04-19 09:06:19,597] [pool-1-thread-3] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-04-19 09:06:19,615] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-04-19 09:06:19,637] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-04-19 09:06:19,655] [pool-1-thread-7] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-04-19 09:06:19,680] [pool-1-thread-1] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-04-19 09:06:19,700] [pool-1-thread-2] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-04-19 09:06:19,720] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS