Started by upstream project "BIOFORMATS-test-repo" build number 38
originally caused by:
 Started by upstream project "Trigger" build number 44
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3390903152625297796.sh
+ '[' visitech = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5237_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 09:06:24,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 09:06:24,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 09:06:24,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:06:24,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:06:24,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 09:06:24,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 09:06:24,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 09:06:24,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:06:24,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:06:24,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 09:06:24,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 09:06:24,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 09:06:25,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 09:06:25,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 09:06:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 09:06:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 09:06:25,223 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 09:06:25,223 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 09:06:25,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 09:06:25,224 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 09:06:25,224 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 09:06:25,225 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 09:06:25,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 321 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-19 09:06:25,236] [main] java.version = 1.8.0_342
   [testng] 09:06:25,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 09:06:25,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:25,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-06-25.log]
   [testng] 09:06:25,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-04-19 09:06:25,298] [main] testng.directory = /data
   [testng] [2024-04-19 09:06:25,298] [main] testng.configDirectory = /config
   [testng] [2024-04-19 09:06:25,312] [main] testng.multiplier = 1.0
   [testng] [2024-04-19 09:06:25,312] [main] testng.in-memory = false
   [testng] [2024-04-19 09:06:25,312] [main] testng.allow-missing = false
   [testng] [2024-04-19 09:06:25,313] [main] user.language = en
   [testng] [2024-04-19 09:06:25,313] [main] user.country = ${user.country}
   [testng] [2024-04-19 09:06:25,313] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-04-19 09:06:26,783] [main] ----------------------------------------
   [testng] [2024-04-19 09:06:26,783] [main] Total files: 45
   [testng] [2024-04-19 09:06:26,783] [main] Scan time: 1.47 s (32 ms/file)
   [testng] [2024-04-19 09:06:26,783] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-19 09:06:33,372] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/525.tif: 
   [testng] 09:06:33,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 09:06:33,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-06-33.log]
   [testng] 09:06:33,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559a83a7 - End of configuration.
   [testng] [2024-04-19 09:06:33,442] [pool-1-thread-12] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: 
   [testng] 09:06:33,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 09:06:33,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-06-33.log]
   [testng] 09:06:33,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@415ba787 - End of configuration.
   [testng] [2024-04-19 09:06:33,482] [pool-1-thread-11] Initializing /data/brian/060916-01-561.tif: 
   [testng] 09:06:33,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 09:06:33,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-06-33.log]
   [testng] 09:06:33,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24df947d - End of configuration.
   [testng] [2024-04-19 09:06:33,591] [pool-1-thread-10] Initializing /data/oliver/20x/488 Report.html: 
   [testng] 09:06:33,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 09:06:33,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-06-33.log]
   [testng] 09:06:33,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ac0d593 - End of configuration.
   [testng] [2024-04-19 09:06:33,683] [pool-1-thread-9] Initializing /data/brian/ScreenShot.jpg: 
   [testng] 09:06:33,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 09:06:33,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-06-33.log]
   [testng] 09:06:33,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6280dfdb - End of configuration.
   [testng] [2024-04-19 09:06:33,758] [pool-1-thread-8] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: 
   [testng] 09:06:33,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 09:06:33,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-06-33.log]
   [testng] 09:06:33,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a6b269 - End of configuration.
   [testng] [2024-04-19 09:06:33,785] [pool-1-thread-7] Initializing /data/brian/070613reA1_2 Report.html: 
   [testng] 09:06:33,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 09:06:33,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-06-33.log]
   [testng] 09:06:33,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5724a0b1 - End of configuration.
   [testng] [2024-04-19 09:06:33,799] [pool-1-thread-6] Initializing /data/brian/060916-01-488.tif: 
   [testng] 09:06:33,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 09:06:33,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-06-33.log]
   [testng] 09:06:33,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e709b57 - End of configuration.
   [testng] [2024-04-19 09:06:33,908] [pool-1-thread-5] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: 
   [testng] 09:06:33,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 09:06:33,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-06-33.log]
   [testng] 09:06:33,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283fe409 - End of configuration.
   [testng] [2024-04-19 09:06:33,939] [pool-1-thread-4] Initializing /data/oliver/20x/491 Report.html: 
   [testng] 09:06:33,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 09:06:33,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:33,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-06-33.log]
   [testng] 09:06:33,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1a7f46 - End of configuration.
   [testng] [2024-04-19 09:06:34,051] [pool-1-thread-3] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: 
   [testng] 09:06:34,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 09:06:34,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:34,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-06-34.log]
   [testng] 09:06:34,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43906dd8 - End of configuration.
   [testng] [2024-04-19 09:06:34,160] [pool-1-thread-2] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: 
   [testng] 09:06:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 09:06:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:06:34,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-06-34.log]
   [testng] 09:06:34,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6645442f - End of configuration.
   [testng] [2024-04-19 09:06:35,631] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/597.tif: 
   [testng] [2024-04-19 09:06:35,686] [pool-1-thread-1] Initializing /data/brian/060916-01 Report.html: 
   [testng] [2024-04-19 09:06:35,870] [pool-1-thread-5] Initializing /data/kazem/noname Report.html: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 26 seconds
Finished: SUCCESS