Started by upstream project "BIOFORMATS-test-repo" build number 38
originally caused by:
Started by upstream project "Trigger" build number 44
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8311120151218563802.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5242_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 09:06:49,068 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 09:06:49,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 09:06:49,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:06:49,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:06:49,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 09:06:49,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 09:06:49,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 09:06:49,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:06:49,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:06:49,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 09:06:49,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 09:06:49,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 09:06:49,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:06:49,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:06:49,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:06:49,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:06:49,351 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:06:49,351 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:06:49,351 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:06:49,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:06:49,352 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 09:06:49,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 09:06:49,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-19 09:06:49,363] [main] java.version = 1.8.0_342
[testng] 09:06:49,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:06:49,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:06:49,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-06-49.log]
[testng] 09:06:49,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-19 09:06:49,431] [main] testng.directory = /data
[testng] [2024-04-19 09:06:49,431] [main] testng.configDirectory = /config
[testng] [2024-04-19 09:06:49,451] [main] testng.multiplier = 1.0
[testng] [2024-04-19 09:06:49,452] [main] testng.in-memory = false
[testng] [2024-04-19 09:06:49,452] [main] testng.allow-missing = false
[testng] [2024-04-19 09:06:49,452] [main] user.language = en
[testng] [2024-04-19 09:06:49,452] [main] user.country = ${user.country}
[testng] [2024-04-19 09:06:49,452] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-19 09:06:49,916] [main] ----------------------------------------
[testng] [2024-04-19 09:06:49,917] [main] Total files: 22
[testng] [2024-04-19 09:06:49,917] [main] Scan time: 0.464 s (21 ms/file)
[testng] [2024-04-19 09:06:49,917] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-19 09:07:34,791] [pool-1-thread-1] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 09:07:34,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:07:34,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:34,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-07-34.log]
[testng] 09:07:34,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609a9a3b - End of configuration.
[testng] [2024-04-19 09:07:35,164] [pool-1-thread-12] Initializing /data/imagej/watershed-animation.zip:
[testng] 09:07:35,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:07:35,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:35,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-07-35.log]
[testng] 09:07:35,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78976ad - End of configuration.
[testng] [2024-04-19 09:07:35,306] [pool-1-thread-11] Initializing /data/imagej/scala-media.zip:
[testng] 09:07:35,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:07:35,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:35,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-07-35.log]
[testng] 09:07:35,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d22cf53 - End of configuration.
[testng] [2024-04-19 09:07:35,394] [pool-1-thread-10] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 09:07:35,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:07:35,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:35,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-07-35.log]
[testng] 09:07:35,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0e9bdb - End of configuration.
[testng] [2024-04-19 09:07:35,560] [pool-1-thread-9] Initializing /data/imagej/mri-stack.zip:
[testng] 09:07:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:07:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:35,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-07-35.log]
[testng] 09:07:35,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a341023 - End of configuration.
[testng] [2024-04-19 09:07:35,797] [pool-1-thread-8] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] 09:07:35,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:07:35,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:35,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-07-35.log]
[testng] 09:07:35,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c823ea1 - End of configuration.
[testng] [2024-04-19 09:07:40,930] [pool-1-thread-7] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 09:07:40,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:07:40,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:40,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-07-40.log]
[testng] 09:07:40,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d77ab48 - End of configuration.
[testng] [2024-04-19 09:07:42,106] [pool-1-thread-6] Initializing /data/imagej/m51.zip:
[testng] 09:07:42,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:07:42,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:42,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-07-42.log]
[testng] 09:07:42,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f65f64 - End of configuration.
[testng] [2024-04-19 09:07:42,194] [pool-1-thread-5] Initializing /data/imagej/se3.zip:
[testng] 09:07:42,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:07:42,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:42,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-07-42.log]
[testng] 09:07:42,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2de57a - End of configuration.
[testng] [2024-04-19 09:07:46,489] [pool-1-thread-4] Initializing /data/imagej/hela-cells.zip:
[testng] 09:07:46,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:07:46,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:46,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-07-46.log]
[testng] 09:07:46,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f06421c - End of configuration.
[testng] [2024-04-19 09:07:47,287] [pool-1-thread-3] Initializing /data/imagej/FluorescentCells.zip:
[testng] 09:07:47,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:07:47,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:47,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-07-47.log]
[testng] 09:07:47,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd19772 - End of configuration.
[testng] [2024-04-19 09:07:47,493] [pool-1-thread-2] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 09:07:47,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:07:47,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:07:47,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-07-47.log]
[testng] 09:07:47,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bba286a - End of configuration.
[testng] [2024-04-19 09:07:55,601] [pool-1-thread-11] Initializing /data/samples/sdub.zip:
[testng] [2024-04-19 09:07:56,139] [pool-1-thread-6] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] [2024-04-19 09:07:58,037] [pool-1-thread-12] Initializing /data/imagej/confocal-stack.zip:
[testng] [2024-04-19 09:08:06,232] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip:
[testng] [2024-04-19 09:08:07,649] [pool-1-thread-3] Initializing /data/imagej/RatBrain.zip:
[testng] [2024-04-19 09:08:08,438] [pool-1-thread-9] Initializing /data/imagej/fat-cells.zip:
[testng] [2024-04-19 09:08:11,897] [pool-1-thread-1] Initializing /data/imagej/flybrain.zip:
[testng] [2024-04-19 09:08:18,999] [pool-1-thread-3] Initializing /data/imagej/xrays.zip:
[testng] [2024-04-19 09:08:19,343] [pool-1-thread-11] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] [2024-04-19 09:08:22,397] [pool-1-thread-3] Initializing /data/imagej/confocal-series.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 28 seconds
Finished: SUCCESS