Started by upstream project "BIOFORMATS-test-repo" build number 38
originally caused by:
Started by upstream project "Trigger" build number 44
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3445847356791911677.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5301_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 09:36:51,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:36:51,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:36:52,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:36:52,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:36:52,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:36:52,051 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:36:52,051 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:36:52,052 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:36:52,052 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 09:36:52,053 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 09:36:52,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 469 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-19 09:36:52,069] [main] java.version = 1.8.0_342
[testng] 09:36:52,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:36:52,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:36:52,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-36-52.log]
[testng] 09:36:52,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-19 09:36:52,196] [main] testng.directory = /data
[testng] [2024-04-19 09:36:52,197] [main] testng.configDirectory = /config
[testng] [2024-04-19 09:36:52,218] [main] testng.multiplier = 1.0
[testng] [2024-04-19 09:36:52,219] [main] testng.in-memory = false
[testng] [2024-04-19 09:36:52,219] [main] testng.allow-missing = false
[testng] [2024-04-19 09:36:52,219] [main] user.language = en
[testng] [2024-04-19 09:36:52,219] [main] user.country = ${user.country}
[testng] [2024-04-19 09:36:52,219] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-19 09:36:53,474] [main] ----------------------------------------
[testng] [2024-04-19 09:36:53,474] [main] Total files: 16
[testng] [2024-04-19 09:36:53,474] [main] Scan time: 1.254 s (78 ms/file)
[testng] [2024-04-19 09:36:53,474] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-19 09:37:05,588] [pool-1-thread-1] Initializing /data/samples/5400.afi:
[testng] 09:37:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:37:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:05,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-37-05.log]
[testng] 09:37:05,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d11691 - End of configuration.
[testng] [2024-04-19 09:37:05,691] [pool-1-thread-12] Initializing /data/samples/5351.afi:
[testng] 09:37:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:37:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:05,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-37-05.log]
[testng] 09:37:05,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec50c69 - End of configuration.
[testng] [2024-04-19 09:37:05,872] [pool-1-thread-11] Initializing /data/samples/5306.afi:
[testng] 09:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:05,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-37-05.log]
[testng] 09:37:05,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61cdaf67 - End of configuration.
[testng] [2024-04-19 09:37:05,936] [pool-1-thread-10] Initializing /data/samples/5383.afi:
[testng] 09:37:05,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:37:05,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:05,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-37-05.log]
[testng] 09:37:05,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3730c1 - End of configuration.
[testng] [2024-04-19 09:37:06,062] [pool-1-thread-9] Initializing /data/samples/5365.afi:
[testng] 09:37:06,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:37:06,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-37-06.log]
[testng] 09:37:06,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01fb27 - End of configuration.
[testng] [2024-04-19 09:37:06,150] [pool-1-thread-8] Initializing /data/samples/5440.afi:
[testng] 09:37:06,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:37:06,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-37-06.log]
[testng] 09:37:06,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration.
[testng] [2024-04-19 09:37:06,407] [pool-1-thread-7] Initializing /data/samples/5446.afi:
[testng] 09:37:06,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:37:06,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-37-06.log]
[testng] 09:37:06,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37a80c41 - End of configuration.
[testng] [2024-04-19 09:37:06,508] [pool-1-thread-6] Initializing /data/samples/5339.afi:
[testng] 09:37:06,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:37:06,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-37-06.log]
[testng] 09:37:06,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee86dd8 - End of configuration.
[testng] [2024-04-19 09:37:06,599] [pool-1-thread-5] Initializing /data/samples/5387.afi:
[testng] 09:37:06,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:37:06,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-37-06.log]
[testng] 09:37:06,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b20e9ec - End of configuration.
[testng] [2024-04-19 09:37:06,714] [pool-1-thread-4] Initializing /data/samples/5407.afi:
[testng] 09:37:06,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:37:06,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-37-06.log]
[testng] 09:37:06,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ecbe74d - End of configuration.
[testng] [2024-04-19 09:37:06,921] [pool-1-thread-3] Initializing /data/samples/5347.afi:
[testng] 09:37:06,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:37:06,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-37-06.log]
[testng] 09:37:06,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be9f71a - End of configuration.
[testng] [2024-04-19 09:37:06,986] [pool-1-thread-2] Initializing /data/samples/5358.afi:
[testng] 09:37:06,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:37:06,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:37:06,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-37-06.log]
[testng] 09:37:06,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b93950 - End of configuration.
[testng] [2024-04-19 09:37:54,742] [pool-1-thread-1] Initializing /data/samples/5414.afi:
[testng] [2024-04-19 09:37:56,194] [pool-1-thread-8] Initializing /data/samples/5343.afi:
[testng] [2024-04-19 09:37:56,833] [pool-1-thread-3] Initializing /data/samples/5371.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 59 seconds
Finished: SUCCESS