Started by upstream project "BIOFORMATS-test-repo" build number 39
originally caused by:
Started by upstream project "Trigger" build number 45
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2364166096284048206.sh
+ '[' ultraview = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5475_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:02:54,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:02:54,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:02:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:02:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:02:54,970 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:02:54,971 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:02:54,971 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:02:54,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:02:54,972 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
[testng] 02:02:54,973 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
[testng] 02:02:54,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 437 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-20 02:02:54,985] [main] java.version = 11.0.16
[testng] 02:02:54,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:02:54,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:55,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-20_02-02-55.log]
[testng] 02:02:55,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-04-20 02:02:55,064] [main] testng.directory = /data
[testng] [2024-04-20 02:02:55,065] [main] testng.configDirectory = /config
[testng] [2024-04-20 02:02:55,087] [main] testng.multiplier = 1.0
[testng] [2024-04-20 02:02:55,090] [main] testng.in-memory = false
[testng] [2024-04-20 02:02:55,090] [main] testng.allow-missing = false
[testng] [2024-04-20 02:02:55,090] [main] user.language = en
[testng] [2024-04-20 02:02:55,090] [main] user.country = ${user.country}
[testng] [2024-04-20 02:02:55,090] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-20 02:02:58,615] [main] ----------------------------------------
[testng] [2024-04-20 02:02:58,616] [main] Total files: 19
[testng] [2024-04-20 02:02:58,616] [main] Scan time: 3.525 s (185 ms/file)
[testng] [2024-04-20 02:02:58,616] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-20 02:03:00,417] [pool-1-thread-1] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM:
[testng] 02:03:00,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:03:00,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-20_02-03-00.log]
[testng] 02:03:00,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597fe7a6 - End of configuration.
[testng] [2024-04-20 02:03:00,465] [pool-1-thread-12] Initializing /data/chad/DIC/EZRA200820080626102637.HTM:
[testng] 02:03:00,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:03:00,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-20_02-03-00.log]
[testng] 02:03:00,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e86d729 - End of configuration.
[testng] [2024-04-20 02:03:00,525] [pool-1-thread-11] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM:
[testng] 02:03:00,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:03:00,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-20_02-03-00.log]
[testng] 02:03:00,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70539cce - End of configuration.
[testng] [2024-04-20 02:03:00,598] [pool-1-thread-10] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM:
[testng] 02:03:00,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:03:00,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-20_02-03-00.log]
[testng] 02:03:00,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c17787 - End of configuration.
[testng] [2024-04-20 02:03:00,633] [pool-1-thread-9] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm:
[testng] 02:03:00,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:03:00,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-20_02-03-00.log]
[testng] 02:03:00,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cbd6d30 - End of configuration.
[testng] [2024-04-20 02:03:00,660] [pool-1-thread-8] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM:
[testng] 02:03:00,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:03:00,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-20_02-03-00.log]
[testng] 02:03:00,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1778f7e0 - End of configuration.
[testng] [2024-04-20 02:03:00,681] [pool-1-thread-7] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM:
[testng] 02:03:00,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:03:00,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-20_02-03-00.log]
[testng] 02:03:00,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66e9d90d - End of configuration.
[testng] [2024-04-20 02:03:00,706] [pool-1-thread-6] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm:
[testng] 02:03:00,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:03:00,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-20_02-03-00.log]
[testng] 02:03:00,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66996649 - End of configuration.
[testng] [2024-04-20 02:03:00,731] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM:
[testng] 02:03:00,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:03:00,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-20_02-03-00.log]
[testng] 02:03:00,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f64f629 - End of configuration.
[testng] [2024-04-20 02:03:00,754] [pool-1-thread-4] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm:
[testng] 02:03:00,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:03:00,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-20_02-03-00.log]
[testng] 02:03:00,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a18b1fe - End of configuration.
[testng] [2024-04-20 02:03:00,778] [pool-1-thread-3] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM:
[testng] 02:03:00,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:03:00,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-20_02-03-00.log]
[testng] 02:03:00,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da6a97b - End of configuration.
[testng] [2024-04-20 02:03:00,805] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm:
[testng] 02:03:00,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:03:00,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:00,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-20_02-03-00.log]
[testng] 02:03:00,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b72186 - End of configuration.
[testng] [2024-04-20 02:03:04,503] [pool-1-thread-9] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm:
[testng] [2024-04-20 02:03:04,559] [pool-1-thread-12] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm:
[testng] [2024-04-20 02:03:04,586] [pool-1-thread-8] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm:
[testng] [2024-04-20 02:03:04,617] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm:
[testng] [2024-04-20 02:03:05,410] [pool-1-thread-4] Initializing /data/todd/movement-1.htm:
[testng] [2024-04-20 02:03:08,240] [pool-1-thread-11] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS