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Started by upstream project "BIOFORMATS-test-repo" build number 345 originally caused by: Started by upstream project "Trigger" build number 371 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8626991575197540716.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_54909_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:37:24,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:37:24,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:37:24,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:37:24,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:37:24,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:37:24,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:37:24,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:37:24,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:37:24,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:37:24,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:37:24,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:37:24,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:37:25,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:37:25,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:37:25,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:37:25,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:37:25,098 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:37:25,098 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:37:25,098 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:37:25,099 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:37:25,099 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:37:25,100 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:37:25,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-14 01:37:25,110] [main] java.version = 1.8.0_342 [testng] 01:37:25,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:37:25,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:25,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-14_01-37-25.log] [testng] 01:37:25,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-14 01:37:25,165] [main] testng.directory = /data [testng] [2025-02-14 01:37:25,166] [main] testng.configDirectory = /config [testng] [2025-02-14 01:37:25,178] [main] testng.multiplier = 1.0 [testng] [2025-02-14 01:37:25,179] [main] testng.in-memory = false [testng] [2025-02-14 01:37:25,179] [main] testng.allow-missing = false [testng] [2025-02-14 01:37:25,179] [main] user.language = en [testng] [2025-02-14 01:37:25,179] [main] user.country = ${user.country} [testng] [2025-02-14 01:37:25,179] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-14 01:37:27,413] [main] ---------------------------------------- [testng] [2025-02-14 01:37:27,413] [main] Total files: 16 [testng] [2025-02-14 01:37:27,413] [main] Scan time: 2.234 s (139 ms/file) [testng] [2025-02-14 01:37:27,413] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-14 01:37:45,889] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 01:37:45,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:37:45,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:45,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-14_01-37-45.log] [testng] 01:37:45,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15ea158a - End of configuration. [testng] [2025-02-14 01:37:46,534] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 01:37:46,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:37:46,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:46,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-14_01-37-46.log] [testng] 01:37:46,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c4027ac - End of configuration. [testng] [2025-02-14 01:37:47,155] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 01:37:47,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:37:47,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:47,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-14_01-37-47.log] [testng] 01:37:47,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc2dc4a - End of configuration. [testng] [2025-02-14 01:37:47,744] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 01:37:47,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:37:47,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:47,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-14_01-37-47.log] [testng] 01:37:47,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc928c3 - End of configuration. [testng] [2025-02-14 01:37:48,279] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 01:37:48,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:37:48,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:48,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-14_01-37-48.log] [testng] 01:37:48,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c4ba6e9 - End of configuration. [testng] [2025-02-14 01:37:49,196] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 01:37:49,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:37:49,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:49,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-14_01-37-49.log] [testng] 01:37:49,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289136e - End of configuration. [testng] [2025-02-14 01:37:50,190] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 01:37:50,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:37:50,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:50,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-14_01-37-50.log] [testng] 01:37:50,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294bdc1f - End of configuration. [testng] [2025-02-14 01:37:50,862] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 01:37:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:37:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:50,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-14_01-37-50.log] [testng] 01:37:50,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4534f3e3 - End of configuration. [testng] [2025-02-14 01:37:51,359] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 01:37:51,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:37:51,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:51,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-14_01-37-51.log] [testng] 01:37:51,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a97577e - End of configuration. [testng] [2025-02-14 01:37:51,976] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 01:37:51,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:37:51,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:51,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-14_01-37-51.log] [testng] 01:37:51,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62af4b0a - End of configuration. [testng] [2025-02-14 01:37:53,122] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 01:37:53,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:37:53,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:53,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-14_01-37-53.log] [testng] 01:37:53,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8fffb - End of configuration. [testng] [2025-02-14 01:37:53,659] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 01:37:53,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:37:53,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:53,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-14_01-37-53.log] [testng] 01:37:53,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ca5a87 - End of configuration. [testng] [2025-02-14 01:38:42,174] [pool-1-thread-2] Initializing /data/samples/5414.afi: [testng] [2025-02-14 01:38:44,289] [pool-1-thread-1] Initializing /data/samples/5343.afi: [testng] [2025-02-14 01:38:45,279] [pool-1-thread-8] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 17 seconds Finished: SUCCESS