Started by upstream project "BIOFORMATS-test-repo" build number 39
originally caused by:
 Started by upstream project "Trigger" build number 45
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2669529635775718951.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5527_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:26:43,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:26:43,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:26:43,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:26:43,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:26:43,334 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:26:43,334 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:26:43,334 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:26:43,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:26:43,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 02:26:43,337 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 02:26:43,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-20 02:26:43,357] [main] java.version = 11.0.16
   [testng] 02:26:43,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:26:43,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:26:43,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-20_02-26-43.log]
   [testng] 02:26:43,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-20 02:26:43,472] [main] testng.directory = /data
   [testng] [2024-04-20 02:26:43,472] [main] testng.configDirectory = /config
   [testng] [2024-04-20 02:26:43,545] [main] testng.multiplier = 1.0
   [testng] [2024-04-20 02:26:43,547] [main] testng.in-memory = false
   [testng] [2024-04-20 02:26:43,547] [main] testng.allow-missing = false
   [testng] [2024-04-20 02:26:43,547] [main] user.language = en
   [testng] [2024-04-20 02:26:43,547] [main] user.country = ${user.country}
   [testng] [2024-04-20 02:26:43,547] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-20 02:26:55,623] [main] ----------------------------------------
   [testng] [2024-04-20 02:26:55,623] [main] Total files: 944
   [testng] [2024-04-20 02:26:55,623] [main] Scan time: 12.076 s (12 ms/file)
   [testng] [2024-04-20 02:26:55,623] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-20 02:27:25,749] [pool-1-thread-1] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 02:27:25,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:27:25,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-20_02-27-25.log]
   [testng] 02:27:25,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f41e387 - End of configuration.
   [testng] [2024-04-20 02:27:25,800] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 02:27:25,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:27:25,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-20_02-27-25.log]
   [testng] 02:27:25,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d98bd7e - End of configuration.
   [testng] [2024-04-20 02:27:25,850] [pool-1-thread-11] Initializing /data/primate/Leica_Image.tif: 
   [testng] 02:27:25,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:27:25,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-20_02-27-25.log]
   [testng] 02:27:25,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b45d9a - End of configuration.
   [testng] [2024-04-20 02:27:25,919] [pool-1-thread-10] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 02:27:25,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:27:25,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-20_02-27-25.log]
   [testng] 02:27:25,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9efcce6 - End of configuration.
   [testng] [2024-04-20 02:27:25,949] [pool-1-thread-9] Initializing /data/brian/Series002_z01.tif: 
   [testng] 02:27:25,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:27:25,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-20_02-27-25.log]
   [testng] 02:27:25,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35503e90 - End of configuration.
   [testng] [2024-04-20 02:27:25,987] [pool-1-thread-8] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 02:27:25,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:27:25,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:25,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-20_02-27-25.log]
   [testng] 02:27:25,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@164d047f - End of configuration.
   [testng] [2024-04-20 02:27:31,489] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 02:27:31,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:27:31,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-20_02-27-31.log]
   [testng] 02:27:31,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b0ca4ce - End of configuration.
   [testng] [2024-04-20 02:27:31,542] [pool-1-thread-6] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 02:27:31,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:27:31,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-20_02-27-31.log]
   [testng] 02:27:31,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ac12bc - End of configuration.
   [testng] [2024-04-20 02:27:31,595] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 02:27:31,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:27:31,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-20_02-27-31.log]
   [testng] 02:27:31,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7081623c - End of configuration.
   [testng] [2024-04-20 02:27:31,640] [pool-1-thread-4] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 02:27:31,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:27:31,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-20_02-27-31.log]
   [testng] 02:27:31,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b95d44 - End of configuration.
   [testng] [2024-04-20 02:27:31,672] [pool-1-thread-3] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 02:27:31,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:27:31,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-20_02-27-31.log]
   [testng] 02:27:31,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a1ca - End of configuration.
   [testng] [2024-04-20 02:27:31,709] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 02:27:31,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:27:31,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:27:31,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-20_02-27-31.log]
   [testng] 02:27:31,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678cffd9 - End of configuration.
   [testng] [2024-04-20 02:27:34,180] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] [2024-04-20 02:27:34,212] [pool-1-thread-11] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] [2024-04-20 02:27:34,248] [pool-1-thread-12] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 10 minutes 34 seconds
Finished: SUCCESS