Started by upstream project "BIOFORMATS-test-repo" build number 40
originally caused by:
 Started by upstream project "Trigger" build number 46
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12204087291853681451.sh
+ '[' leica = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5547_merge_ci -v /uod/idr/repos/curated/leica:/data -v /uod/idr-scratch/merge-ci/curated/leica:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:20:16,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:20:16,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:20:16,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:16,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:16,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:20:16,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:20:16,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:20:16,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:16,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:16,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:20:16,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:20:16,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:20:16,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:20:16,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:20:16,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:20:16,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:20:16,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:20:16,915 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:20:16,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:20:16,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:20:16,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:20:16,916 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:20:16,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-21 01:20:16,925] [main] java.version = 17.0.2
   [testng] 01:20:16,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:20:16,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:16,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_01-20-16.log]
   [testng] 01:20:16,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-04-21 01:20:16,969] [main] testng.directory = /data
   [testng] [2024-04-21 01:20:16,969] [main] testng.configDirectory = /config
   [testng] [2024-04-21 01:20:16,977] [main] testng.multiplier = 1.0
   [testng] [2024-04-21 01:20:16,978] [main] testng.in-memory = false
   [testng] [2024-04-21 01:20:16,978] [main] testng.allow-missing = false
   [testng] [2024-04-21 01:20:16,978] [main] user.language = en
   [testng] [2024-04-21 01:20:16,978] [main] user.country = ${user.country}
   [testng] [2024-04-21 01:20:16,978] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-21 01:20:28,575] [main] ----------------------------------------
   [testng] [2024-04-21 01:20:28,575] [main] Total files: 5651
   [testng] [2024-04-21 01:20:28,576] [main] Scan time: 11.597 s (2 ms/file)
   [testng] [2024-04-21 01:20:28,576] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 44 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-21 01:20:41,963] [pool-1-thread-1] Initializing /data/julie/biorad/8291mcd8_raw01.pic: 
   [testng] 01:20:41,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:20:41,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:41,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_01-20-41.log]
   [testng] 01:20:41,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b46b891 - End of configuration.
   [testng] [2024-04-21 01:20:42,003] [pool-1-thread-12] Initializing /data/michael/2007-01-31_zres_sp2.lei: 
   [testng] 01:20:42,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:20:42,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-21_01-20-42.log]
   [testng] 01:20:42,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359bcb72 - End of configuration.
   [testng] [2024-04-21 01:20:42,040] [pool-1-thread-11] Initializing /data/constantin/cell6/cell6/Quant_Image_01.jpg: 
   [testng] 01:20:42,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:20:42,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-21_01-20-42.log]
   [testng] 01:20:42,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30af2486 - End of configuration.
   [testng] [2024-04-21 01:20:42,063] [pool-1-thread-10] Initializing /data/christophe/LEI_Saturated_Bug/Saturated_Problem.tif: 
   [testng] 01:20:42,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:20:42,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-21_01-20-42.log]
   [testng] 01:20:42,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68380114 - End of configuration.
   [testng] [2024-04-21 01:20:42,107] [pool-1-thread-9] Initializing /data/vytas/4voxels/4voxels.lei: 
   [testng] 01:20:42,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:20:42,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-21_01-20-42.log]
   [testng] 01:20:42,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@435b1d2f - End of configuration.
   [testng] [2024-04-21 01:20:42,157] [pool-1-thread-8] Initializing /data/matija/PapilioScale40x/PapilioScale40x.lei: 
   [testng] 01:20:42,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:20:42,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-21_01-20-42.log]
   [testng] 01:20:42,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4a0325 - End of configuration.
   [testng] [2024-04-21 01:20:42,180] [pool-1-thread-7] Initializing /data/constantin/cell6/Quant_Image_02.jpg: 
   [testng] 01:20:42,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:20:42,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-21_01-20-42.log]
   [testng] 01:20:42,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b7fd9b9 - End of configuration.
   [testng] [2024-04-21 01:20:42,190] [pool-1-thread-6] Initializing /data/constantin/cell6/Quant_Image_01.jpg: 
   [testng] 01:20:42,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:20:42,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-21_01-20-42.log]
   [testng] 01:20:42,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@787e1388 - End of configuration.
   [testng] [2024-04-21 01:20:42,197] [pool-1-thread-5] Initializing /data/christophe/Leica stacks/Nf5.lei: 
   [testng] 01:20:42,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:20:42,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-21_01-20-42.log]
   [testng] 01:20:42,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4be0f827 - End of configuration.
   [testng] [2024-04-21 01:20:42,224] [pool-1-thread-4] Initializing /data/simon/Leica demo/GFP-YFPcaax/GFP-YFPcaax.lei: 
   [testng] 01:20:42,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:20:42,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-21_01-20-42.log]
   [testng] 01:20:42,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@333e169c - End of configuration.
   [testng] [2024-04-21 01:20:42,413] [pool-1-thread-3] Initializing /data/samples/Leica_sample.lei: 
   [testng] 01:20:42,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:20:42,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-21_01-20-42.log]
   [testng] 01:20:42,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a302ed - End of configuration.
   [testng] [2024-04-21 01:20:42,433] [pool-1-thread-2] Initializing /data/constantin/cell6/cell6.lei: 
   [testng] 01:20:42,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:20:42,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:42,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_01-20-42.log]
   [testng] 01:20:42,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68a7b9bd - End of configuration.
   [testng] [2024-04-21 01:20:43,511] [pool-1-thread-7] Initializing /data/david/intestine/intestine.lei: 
   [testng] [2024-04-21 01:20:43,532] [pool-1-thread-11] Initializing /data/julie/biorad/25-65.tif: 
   [testng] [2024-04-21 01:20:43,589] [pool-1-thread-6] Initializing /data/stjude/NIHSSE02-3.lei: 
   [testng] [2024-04-21 01:20:43,629] [pool-1-thread-3] Initializing /data/berra/eggcmgfp230909/eggcmgfp230909.lei: 
   [testng] [2024-04-21 01:20:43,919] [pool-1-thread-1] Initializing /data/brian/050627-leica/050628-leica.lei: 
   [testng] [2024-04-21 01:20:44,683] [pool-1-thread-10] Initializing /data/joel/sequential scan 2/sequential scan 2.lei: 
   [testng] [2024-04-21 01:20:44,725] [pool-1-thread-12] Initializing /data/simon/Leica demo/test/test.lei: 
   [testng] [2024-04-21 01:20:45,143] [pool-1-thread-11] Initializing /data/brian/leica-original/050118.lei: 
   [testng] [2024-04-21 01:20:49,664] [pool-1-thread-6] Initializing /data/brian/tropo/tropo.lei: 
   [testng] [2024-04-21 01:20:51,337] [pool-1-thread-6] Initializing /data/constantin/cell6/Graphs_1_00.jpg: 
   [testng] [2024-04-21 01:20:51,750] [pool-1-thread-6] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/Exemple.tif: 
   [testng] [2024-04-21 01:20:52,638] [pool-1-thread-6] Initializing /data/grant/Leica SP2 (25-11-10).lei: 
   [testng] [2024-04-21 01:20:53,914] [pool-1-thread-5] Initializing /data/martin/100422_02-rg-100x_CF1/100422_02-rg-100x_CF1.lei: 
   [testng] [2024-04-21 01:20:55,747] [pool-1-thread-8] Initializing /data/simon/Leica demo/RNA FISH/RNA FISH.lei: 
   [testng] [2024-04-21 01:20:58,725] [pool-1-thread-2] Initializing /data/constantin/cell6/Quant_Image_00.jpg: 
   [testng] [2024-04-21 01:20:58,935] [pool-1-thread-2] Initializing /data/andrey/10310500/10310500.lei: 
   [testng] [2024-04-21 01:21:00,692] [pool-1-thread-4] Initializing /data/clay/leica_stack-exported/leica_stack-exported.lei: 
   [testng] [2024-04-21 01:21:01,267] [pool-1-thread-4] Initializing /data/constantin/cell6/cell6/Logo.jpg: 
   [testng] [2024-04-21 01:21:01,396] [pool-1-thread-4] Initializing /data/clay/leica_stack.tif: 
   [testng] [2024-04-21 01:21:01,727] [pool-1-thread-4] Initializing /data/martin/samples-SP2/samples-SP2.lei: 
   [testng] [2024-04-21 01:21:03,474] [pool-1-thread-10] Initializing /data/clay/leica_stack.lei: 
   [testng] [2024-04-21 01:21:04,144] [pool-1-thread-10] Initializing /data/constantin/cell6/cell6/Quant_Image_00.jpg: 
   [testng] [2024-04-21 01:21:04,302] [pool-1-thread-10] Initializing /data/joel/sequential scan 3/sequential scan 3.lei: 
   [testng] [2024-04-21 01:21:08,756] [pool-1-thread-8] Initializing /data/david/megan/megan.lei: 
   [testng] [2024-04-21 01:21:11,447] [pool-1-thread-12] Initializing /data/oliver/o459/o459.lei: 
   [testng] [2024-04-21 01:21:18,653] [pool-1-thread-4] Initializing /data/julie/c164_1.tif: 
   [testng] [2024-04-21 01:21:20,969] [pool-1-thread-7] Initializing /data/simon/Leica demo/CFP-DsRed YFP neg/CFP-DsRed YFP neg.lei: 
   [testng] [2024-04-21 01:21:22,137] [pool-1-thread-6] Initializing /data/christophe/LEI_Saturated_Bug/070123_HippoQ2Q3/070123_HippoQ2Q3.lei: 
   [testng] [2024-04-21 01:21:23,470] [pool-1-thread-4] Initializing /data/mark/071026-561nm check/071026-561nm check.lei: 
   [testng] [2024-04-21 01:21:24,132] [pool-1-thread-3] Initializing /data/simon/Leica demo/fish/fish.lei: 
   [testng] [2024-04-21 01:21:24,775] [pool-1-thread-10] Initializing /data/constantin/cell6/Logo.jpg: 
   [testng] [2024-04-21 01:21:24,883] [pool-1-thread-10] Initializing /data/constantin/cell6/cell6/Quant_Image_02.jpg: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2332, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 3 minutes 27 seconds
Finished: SUCCESS