Started by upstream project "BIOFORMATS-test-repo" build number 40
originally caused by:
Started by upstream project "Trigger" build number 46
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12795243515968283970.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5575_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:23:44,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:23:44,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:23:44,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:44,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:44,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:23:44,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:23:44,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:23:44,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:44,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:44,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:23:44,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:23:44,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:23:44,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:23:44,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:23:45,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:23:45,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:23:45,025 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:23:45,026 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:23:45,026 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:23:45,027 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:23:45,027 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:23:45,028 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:23:45,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-21 01:23:45,046] [main] java.version = 17.0.2
[testng] 01:23:45,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:23:45,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:45,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_01-23-45.log]
[testng] 01:23:45,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-21 01:23:45,141] [main] testng.directory = /data
[testng] [2024-04-21 01:23:45,141] [main] testng.configDirectory = /config
[testng] [2024-04-21 01:23:45,155] [main] testng.multiplier = 1.0
[testng] [2024-04-21 01:23:45,157] [main] testng.in-memory = false
[testng] [2024-04-21 01:23:45,157] [main] testng.allow-missing = false
[testng] [2024-04-21 01:23:45,157] [main] user.language = en
[testng] [2024-04-21 01:23:45,157] [main] user.country = ${user.country}
[testng] [2024-04-21 01:23:45,157] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-21 01:23:58,403] [main] ----------------------------------------
[testng] [2024-04-21 01:23:58,403] [main] Total files: 226
[testng] [2024-04-21 01:23:58,403] [main] Scan time: 13.246 s (58 ms/file)
[testng] [2024-04-21 01:23:58,404] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-21 01:24:04,911] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 01:24:04,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:24:04,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:04,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_01-24-04.log]
[testng] 01:24:04,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63651d7e - End of configuration.
[testng] [2024-04-21 01:24:04,935] [pool-1-thread-12] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 01:24:04,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:24:04,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:04,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-21_01-24-04.log]
[testng] 01:24:04,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42135a37 - End of configuration.
[testng] [2024-04-21 01:24:04,999] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 01:24:04,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:24:04,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-21_01-24-05.log]
[testng] 01:24:05,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7909862b - End of configuration.
[testng] [2024-04-21 01:24:05,083] [pool-1-thread-10] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 01:24:05,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:24:05,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-21_01-24-05.log]
[testng] 01:24:05,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35349a0f - End of configuration.
[testng] [2024-04-21 01:24:05,091] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 01:24:05,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:24:05,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-21_01-24-05.log]
[testng] 01:24:05,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365325a - End of configuration.
[testng] [2024-04-21 01:24:05,115] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 01:24:05,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:24:05,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-21_01-24-05.log]
[testng] 01:24:05,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ff2f96 - End of configuration.
[testng] [2024-04-21 01:24:05,152] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL:
[testng] 01:24:05,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:24:05,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-21_01-24-05.log]
[testng] 01:24:05,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@251a166a - End of configuration.
[testng] [2024-04-21 01:24:05,160] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 01:24:05,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:24:05,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-21_01-24-05.log]
[testng] 01:24:05,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8f5386 - End of configuration.
[testng] [2024-04-21 01:24:05,186] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.avi:
[testng] 01:24:05,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:24:05,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-21_01-24-05.log]
[testng] 01:24:05,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4acc8fc1 - End of configuration.
[testng] [2024-04-21 01:24:05,203] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 01:24:05,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:24:05,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-21_01-24-05.log]
[testng] 01:24:05,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673bbc81 - End of configuration.
[testng] [2024-04-21 01:24:05,233] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 01:24:05,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:24:05,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-21_01-24-05.log]
[testng] 01:24:05,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e571ae - End of configuration.
[testng] [2024-04-21 01:24:05,243] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:24:05,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:24:05,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:05,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_01-24-05.log]
[testng] 01:24:05,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2248a77e - End of configuration.
[testng] [2024-04-21 01:24:07,763] [pool-1-thread-10] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-04-21 01:24:07,774] [pool-1-thread-7] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-04-21 01:24:07,814] [pool-1-thread-6] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-04-21 01:24:07,826] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-04-21 01:24:07,838] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-04-21 01:24:07,883] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-04-21 01:24:07,890] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-04-21 01:24:07,919] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-04-21 01:24:08,038] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL:
[testng] [2024-04-21 01:24:08,044] [pool-1-thread-12] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-04-21 01:24:08,368] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] [2024-04-21 01:24:08,378] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-04-21 01:24:08,476] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-04-21 01:24:08,500] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-04-21 01:24:08,591] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-04-21 01:24:08,952] [pool-1-thread-11] Initializing /data/iplab/Blend_Tritc.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 29 seconds
Finished: SUCCESS