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Started by upstream project "BIOFORMATS-test-repo" build number 353 originally caused by: Started by upstream project "Trigger" build number 379 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12369526387476612624.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_56173_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:03:23,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:03:23,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 08:03:23,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:03:23,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:03:23,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:03:23,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:03:23,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:03:23,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:03:23,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:03:23,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:03:23,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:03:23,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:03:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:03:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:03:23,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:03:23,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:03:23,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:03:23,470 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:03:23,470 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:03:23,471 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:03:23,471 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 08:03:23,472 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 08:03:23,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-21 08:03:23,481] [main] java.version = 1.8.0_342 [testng] 08:03:23,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:03:23,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:23,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-21_08-03-23.log] [testng] 08:03:23,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-21 08:03:23,534] [main] testng.directory = /data [testng] [2025-02-21 08:03:23,534] [main] testng.configDirectory = /config [testng] [2025-02-21 08:03:23,546] [main] testng.multiplier = 1.0 [testng] [2025-02-21 08:03:23,547] [main] testng.in-memory = false [testng] [2025-02-21 08:03:23,547] [main] testng.allow-missing = false [testng] [2025-02-21 08:03:23,547] [main] user.language = en [testng] [2025-02-21 08:03:23,547] [main] user.country = ${user.country} [testng] [2025-02-21 08:03:23,547] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-21 08:03:24,314] [main] ---------------------------------------- [testng] [2025-02-21 08:03:24,314] [main] Total files: 31 [testng] [2025-02-21 08:03:24,314] [main] Scan time: 0.767 s (24 ms/file) [testng] [2025-02-21 08:03:24,314] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-21 08:03:28,207] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] 08:03:28,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:03:28,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:28,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-21_08-03-28.log] [testng] 08:03:28,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99398d - End of configuration. [testng] [2025-02-21 08:03:28,287] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 08:03:28,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:03:28,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:28,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-21_08-03-28.log] [testng] 08:03:28,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2705cb8e - End of configuration. [testng] [2025-02-21 08:03:29,012] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 08:03:29,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:03:29,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-21_08-03-29.log] [testng] 08:03:29,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346cc407 - End of configuration. [testng] [2025-02-21 08:03:29,076] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp: [testng] 08:03:29,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:03:29,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-21_08-03-29.log] [testng] 08:03:29,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@734f37e8 - End of configuration. [testng] [2025-02-21 08:03:29,147] [pool-1-thread-9] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 08:03:29,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:03:29,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-21_08-03-29.log] [testng] 08:03:29,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7d7029 - End of configuration. [testng] [2025-02-21 08:03:29,211] [pool-1-thread-8] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 08:03:29,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:03:29,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-21_08-03-29.log] [testng] 08:03:29,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba9a2d7 - End of configuration. [testng] [2025-02-21 08:03:29,276] [pool-1-thread-7] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 08:03:29,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:03:29,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-21_08-03-29.log] [testng] 08:03:29,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450a92db - End of configuration. [testng] [2025-02-21 08:03:29,347] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp: [testng] 08:03:29,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:03:29,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-21_08-03-29.log] [testng] 08:03:29,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6004de85 - End of configuration. [testng] [2025-02-21 08:03:29,424] [pool-1-thread-5] Initializing /data/curtis/image2.bmp: [testng] 08:03:29,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:03:29,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-21_08-03-29.log] [testng] 08:03:29,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a25918 - End of configuration. [testng] [2025-02-21 08:03:29,494] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp: [testng] 08:03:29,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:03:29,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-21_08-03-29.log] [testng] 08:03:29,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0631d - End of configuration. [testng] [2025-02-21 08:03:29,573] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] 08:03:29,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:03:29,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-21_08-03-29.log] [testng] 08:03:29,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63c2ebd8 - End of configuration. [testng] [2025-02-21 08:03:29,651] [pool-1-thread-2] Initializing /data/curtis/image4.bmp: [testng] 08:03:29,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:03:29,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:29,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-21_08-03-29.log] [testng] 08:03:29,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e02684 - End of configuration. [testng] [2025-02-21 08:03:32,097] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-02-21 08:03:32,157] [pool-1-thread-2] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2025-02-21 08:03:32,217] [pool-1-thread-7] Initializing /data/curtis/image5.bmp: [testng] [2025-02-21 08:03:32,273] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2025-02-21 08:03:32,337] [pool-1-thread-5] Initializing /data/curtis/image1.bmp: [testng] [2025-02-21 08:03:32,391] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2025-02-21 08:03:32,449] [pool-1-thread-10] Initializing /data/big-images/6kx6k.bmp: [testng] [2025-02-21 08:03:32,509] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2025-02-21 08:03:32,755] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2025-02-21 08:03:33,877] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2025-02-21 08:03:33,995] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2025-02-21 08:03:34,136] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2025-02-21 08:03:34,199] [pool-1-thread-5] Initializing /data/brian/images/raw_a.bmp: [testng] [2025-02-21 08:03:34,259] [pool-1-thread-11] Initializing /data/curtis/image3.bmp: [testng] [2025-02-21 08:03:34,319] [pool-1-thread-6] Initializing /data/ticket-12971/foo.bmp: [testng] [2025-02-21 08:03:34,597] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2025-02-21 08:03:34,848] [pool-1-thread-2] Initializing /data/big-images/8kx8k.bmp: [testng] [2025-02-21 08:03:35,856] [pool-1-thread-6] Initializing /data/frank/cell_mask_error.bmp: [testng] [2025-02-21 08:03:35,932] [pool-1-thread-11] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 seconds Finished: SUCCESS