Started by upstream project "BIOFORMATS-test-repo" build number 354 originally caused by: Started by upstream project "Trigger" build number 380 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16405590751696846435.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_56402_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:44:32,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:44:32,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:44:32,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:32,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:32,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:44:32,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:44:32,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:44:32,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:32,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:32,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:44:32,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:44:32,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:44:33,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:44:33,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:44:33,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:44:33,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:44:33,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:44:33,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:44:33,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:44:33,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:44:33,172 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:44:33,173 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:44:33,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-22 01:44:33,182] [main] java.version = 11.0.16 [testng] 01:44:33,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:44:33,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:33,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-22_01-44-33.log] [testng] 01:44:33,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-02-22 01:44:33,234] [main] testng.directory = /data [testng] [2025-02-22 01:44:33,235] [main] testng.configDirectory = /config [testng] [2025-02-22 01:44:33,245] [main] testng.multiplier = 1.0 [testng] [2025-02-22 01:44:33,246] [main] testng.in-memory = false [testng] [2025-02-22 01:44:33,246] [main] testng.allow-missing = false [testng] [2025-02-22 01:44:33,246] [main] user.language = en [testng] [2025-02-22 01:44:33,246] [main] user.country = ${user.country} [testng] [2025-02-22 01:44:33,246] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-22 01:47:43,555] [main] ---------------------------------------- [testng] [2025-02-22 01:47:43,556] [main] Total files: 268 [testng] [2025-02-22 01:47:43,556] [main] Scan time: 190.308 s (710 ms/file) [testng] [2025-02-22 01:47:43,556] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-22 01:51:34,096] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 01:51:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:51:34,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:34,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-22_01-51-34.log] [testng] 01:51:34,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125b1fd - End of configuration. [testng] [2025-02-22 01:51:35,078] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 01:51:35,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:51:35,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:35,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-22_01-51-35.log] [testng] 01:51:35,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d18947 - End of configuration. [testng] [2025-02-22 01:51:35,605] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] 01:51:35,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:51:35,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:35,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-22_01-51-35.log] [testng] 01:51:35,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fbf0c51 - End of configuration. [testng] [2025-02-22 01:51:36,122] [pool-1-thread-10] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] 01:51:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:51:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:36,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-22_01-51-36.log] [testng] 01:51:36,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4005db3c - End of configuration. [testng] [2025-02-22 01:51:36,943] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] 01:51:36,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:51:36,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:36,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-22_01-51-36.log] [testng] 01:51:36,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a270d4 - End of configuration. [testng] [2025-02-22 01:51:37,458] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] 01:51:37,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:51:37,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:37,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-22_01-51-37.log] [testng] 01:51:37,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aefea95 - End of configuration. [testng] [2025-02-22 01:51:37,964] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 01:51:37,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:51:37,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:37,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-22_01-51-37.log] [testng] 01:51:37,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41415c89 - End of configuration. [testng] [2025-02-22 01:51:39,706] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:51:39,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:51:39,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:39,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-22_01-51-39.log] [testng] 01:51:39,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d08362d - End of configuration. [testng] [2025-02-22 01:51:40,242] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] 01:51:40,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:51:40,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:40,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-22_01-51-40.log] [testng] 01:51:40,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a38845 - End of configuration. [testng] [2025-02-22 01:51:40,827] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] 01:51:40,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:51:40,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:40,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-22_01-51-40.log] [testng] 01:51:40,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d9c73 - End of configuration. [testng] [2025-02-22 01:51:41,143] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 01:51:41,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:51:41,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:41,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-22_01-51-41.log] [testng] 01:51:41,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18855e3f - End of configuration. [testng] [2025-02-22 01:51:41,877] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] 01:51:41,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:51:41,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:41,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-22_01-51-41.log] [testng] 01:51:41,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cf6da95 - End of configuration. [testng] [2025-02-22 01:51:48,012] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2025-02-22 01:51:48,635] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2025-02-22 01:51:49,443] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2025-02-22 01:51:49,854] [pool-1-thread-5] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2025-02-22 01:51:50,190] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2025-02-22 01:51:50,464] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2025-02-22 01:51:50,994] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2025-02-22 01:51:52,544] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2025-02-22 01:51:56,491] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2025-02-22 01:51:58,656] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2025-02-22 01:52:00,771] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2025-02-22 01:52:02,720] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2025-02-22 01:52:03,382] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2025-02-22 01:52:03,979] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2025-02-22 01:52:04,416] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2025-02-22 01:52:04,920] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2025-02-22 01:52:05,716] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2025-02-22 01:52:06,158] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2025-02-22 01:52:07,968] [pool-1-thread-9] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2025-02-22 01:52:12,440] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2025-02-22 01:52:12,841] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2025-02-22 01:52:13,958] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2025-02-22 01:52:15,518] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2025-02-22 01:52:16,669] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2025-02-22 01:52:17,304] [pool-1-thread-11] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2025-02-22 01:52:19,390] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2025-02-22 01:52:20,123] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2025-02-22 01:52:20,905] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2025-02-22 01:52:22,913] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2025-02-22 01:52:23,591] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2025-02-22 01:52:25,895] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2025-02-22 01:52:26,709] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2025-02-22 01:52:28,729] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2025-02-22 01:52:30,842] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2025-02-22 01:52:31,767] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2025-02-22 01:52:33,686] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits: [testng] [2025-02-22 01:52:33,860] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2025-02-22 01:52:34,454] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2025-02-22 01:52:36,743] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2025-02-22 01:52:37,695] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2025-02-22 01:52:38,723] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2025-02-22 01:52:39,075] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2025-02-22 01:52:40,758] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2025-02-22 01:52:41,536] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2025-02-22 01:52:42,164] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2025-02-22 01:52:43,706] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2025-02-22 01:52:44,172] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2025-02-22 01:52:44,383] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2025-02-22 01:52:45,814] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2025-02-22 01:52:46,407] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2025-02-22 01:52:47,973] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2025-02-22 01:52:49,831] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2025-02-22 01:52:50,344] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2025-02-22 01:52:51,040] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2025-02-22 01:52:52,513] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2025-02-22 01:52:53,085] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2025-02-22 01:52:53,673] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2025-02-22 01:52:54,585] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2025-02-22 01:52:57,738] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2025-02-22 01:52:58,246] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2025-02-22 01:52:58,739] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2025-02-22 01:52:59,326] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2025-02-22 01:53:02,293] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2025-02-22 01:53:02,681] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2025-02-22 01:53:03,511] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2025-02-22 01:53:04,046] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2025-02-22 01:53:05,834] [pool-1-thread-2] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2025-02-22 01:53:06,605] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2025-02-22 01:53:08,462] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2025-02-22 01:53:09,713] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2025-02-22 01:53:10,271] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2025-02-22 01:53:10,864] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2025-02-22 01:53:12,768] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2025-02-22 01:53:13,703] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2025-02-22 01:53:14,347] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2025-02-22 01:53:15,703] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2025-02-22 01:53:15,934] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2025-02-22 01:53:16,826] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2025-02-22 01:53:17,754] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2025-02-22 01:53:19,697] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2025-02-22 01:53:20,523] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2025-02-22 01:53:22,420] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2025-02-22 01:53:23,321] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2025-02-22 01:53:25,109] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2025-02-22 01:53:26,326] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2025-02-22 01:53:28,107] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2025-02-22 01:53:29,080] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2025-02-22 01:53:29,628] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2025-02-22 01:53:30,220] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2025-02-22 01:53:30,628] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2025-02-22 01:53:31,709] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2025-02-22 01:53:32,391] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2025-02-22 01:53:34,247] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2025-02-22 01:53:34,911] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2025-02-22 01:53:37,038] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2025-02-22 01:53:37,460] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2025-02-22 01:53:38,425] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2025-02-22 01:53:40,289] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2025-02-22 01:53:40,856] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2025-02-22 01:53:41,325] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2025-02-22 01:53:41,827] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2025-02-22 01:53:42,714] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2025-02-22 01:53:44,689] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2025-02-22 01:53:45,747] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2025-02-22 01:53:47,366] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2025-02-22 01:53:47,849] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2025-02-22 01:53:48,373] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2025-02-22 01:53:49,839] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2025-02-22 01:53:51,584] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2025-02-22 01:53:53,513] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2025-02-22 01:53:55,239] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2025-02-22 01:53:56,567] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2025-02-22 01:53:56,764] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2025-02-22 01:53:57,084] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2025-02-22 01:53:57,901] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2025-02-22 01:54:00,155] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2025-02-22 01:54:00,790] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2025-02-22 01:54:03,464] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2025-02-22 01:54:04,739] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2025-02-22 01:54:05,340] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2025-02-22 01:54:06,061] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2025-02-22 01:54:08,205] [pool-1-thread-1] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2025-02-22 01:54:10,234] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2025-02-22 01:54:10,808] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2025-02-22 01:54:12,456] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2025-02-22 01:54:16,086] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2025-02-22 01:54:17,097] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2025-02-22 01:54:18,125] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2025-02-22 01:54:19,037] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2025-02-22 01:54:20,224] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2025-02-22 01:54:20,878] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2025-02-22 01:54:21,969] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2025-02-22 01:54:24,960] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2025-02-22 01:54:26,923] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2025-02-22 01:54:28,856] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2025-02-22 01:54:30,610] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2025-02-22 01:54:31,407] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2025-02-22 01:54:33,235] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2025-02-22 01:54:33,847] [pool-1-thread-6] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2025-02-22 01:54:35,865] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2025-02-22 01:54:36,609] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2025-02-22 01:54:37,327] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2025-02-22 01:54:38,663] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2025-02-22 01:54:40,289] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2025-02-22 01:54:42,131] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2025-02-22 01:54:44,303] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2025-02-22 01:54:44,782] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2025-02-22 01:54:46,414] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 24 seconds Finished: SUCCESS