Started by upstream project "BIOFORMATS-test-repo" build number 40
originally caused by:
Started by upstream project "Trigger" build number 46
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins624907482272526274.sh
+ '[' klb = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5679_merge_ci -v /uod/idr/repos/curated/klb:/data -v /uod/idr-scratch/merge-ci/curated/klb:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:24:26,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:24:26,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:24:26,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:24:26,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:24:26,986 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:24:26,987 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:24:26,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:24:26,988 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:24:26,988 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
[testng] 02:24:26,989 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
[testng] 02:24:26,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 923 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-21 02:24:27,003] [main] java.version = 17.0.2
[testng] 02:24:27,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:24:27,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:27,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_02-24-27.log]
[testng] 02:24:27,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-21 02:24:27,145] [main] testng.directory = /data
[testng] [2024-04-21 02:24:27,146] [main] testng.configDirectory = /config
[testng] [2024-04-21 02:24:27,171] [main] testng.multiplier = 1.0
[testng] [2024-04-21 02:24:27,172] [main] testng.in-memory = false
[testng] [2024-04-21 02:24:27,172] [main] testng.allow-missing = false
[testng] [2024-04-21 02:24:27,172] [main] user.language = en
[testng] [2024-04-21 02:24:27,172] [main] user.country = ${user.country}
[testng] [2024-04-21 02:24:27,172] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-21 02:24:48,566] [main] ----------------------------------------
[testng] [2024-04-21 02:24:48,567] [main] Total files: 123
[testng] [2024-04-21 02:24:48,567] [main] Scan time: 21.394 s (173 ms/file)
[testng] [2024-04-21 02:24:48,567] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 2 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-21 02:24:49,233] [pool-1-thread-1] Initializing /data/public/idr0044/Mmu_E1_CAGTAG1.TM000000_timeFused_blending/SPM00_TM000000_CM00_CM01_CHN00.fusedStack.corrected.shifted.klb:
[testng] 02:24:49,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:24:49,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:49,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_02-24-49.log]
[testng] 02:24:49,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@666f73 - End of configuration.
[testng] [2024-04-21 02:24:49,335] [pool-1-thread-2] Initializing /data/public/samples/img.klb:
[testng] 02:24:49,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:24:49,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:49,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_02-24-49.log]
[testng] 02:24:49,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e5ae529 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 106, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 57 seconds
Finished: SUCCESS