Started by upstream project "BIOFORMATS-test-repo" build number 41
originally caused by:
Started by upstream project "Trigger" build number 47
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3999017025995429069.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5739_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:25:56,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:25:56,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:25:56,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:56,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:56,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:25:56,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:25:56,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:25:56,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:56,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:56,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:25:56,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:56,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:57,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:57,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:57,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:57,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:57,146 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:57,146 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:57,146 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:57,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:57,147 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:25:57,148 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:25:57,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 313 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-22 01:25:57,160] [main] java.version = 1.8.0_342
[testng] 01:25:57,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:57,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:57,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_01-25-57.log]
[testng] 01:25:57,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-22 01:25:57,223] [main] testng.directory = /data
[testng] [2024-04-22 01:25:57,223] [main] testng.configDirectory = /config
[testng] [2024-04-22 01:25:57,237] [main] testng.multiplier = 1.0
[testng] [2024-04-22 01:25:57,237] [main] testng.in-memory = false
[testng] [2024-04-22 01:25:57,237] [main] testng.allow-missing = false
[testng] [2024-04-22 01:25:57,237] [main] user.language = fr
[testng] [2024-04-22 01:25:57,237] [main] user.country = FR
[testng] [2024-04-22 01:25:57,237] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-22 01:26:09,618] [main] ----------------------------------------
[testng] [2024-04-22 01:26:09,618] [main] Total files: 226
[testng] [2024-04-22 01:26:09,619] [main] Scan time: 12.381 s (54 ms/file)
[testng] [2024-04-22 01:26:09,619] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-22 01:26:17,674] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 01:26:17,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:17,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_01-26-17.log]
[testng] 01:26:17,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fcc184e - End of configuration.
[testng] [2024-04-22 01:26:17,754] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] 01:26:17,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:26:17,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_01-26-17.log]
[testng] 01:26:17,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b47d84 - End of configuration.
[testng] [2024-04-22 01:26:17,769] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 01:26:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:26:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_01-26-17.log]
[testng] 01:26:17,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64e853f1 - End of configuration.
[testng] [2024-04-22 01:26:17,790] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] 01:26:17,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:26:17,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_01-26-17.log]
[testng] 01:26:17,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30762747 - End of configuration.
[testng] [2024-04-22 01:26:17,798] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 01:26:17,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:26:17,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_01-26-17.log]
[testng] 01:26:17,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f416a94 - End of configuration.
[testng] [2024-04-22 01:26:17,856] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif:
[testng] 01:26:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:26:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_01-26-17.log]
[testng] 01:26:17,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c0f24d - End of configuration.
[testng] [2024-04-22 01:26:17,945] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:26:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:26:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_01-26-17.log]
[testng] 01:26:17,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b55462c - End of configuration.
[testng] [2024-04-22 01:26:17,986] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:26:17,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:26:17,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:17,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_01-26-17.log]
[testng] 01:26:17,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa5486d - End of configuration.
[testng] [2024-04-22 01:26:18,004] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:26:18,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:26:18,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:18,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_01-26-18.log]
[testng] 01:26:18,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e43929c - End of configuration.
[testng] [2024-04-22 01:26:18,143] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 01:26:18,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:26:18,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:18,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_01-26-18.log]
[testng] 01:26:18,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74369115 - End of configuration.
[testng] [2024-04-22 01:26:18,158] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 01:26:18,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:26:18,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:18,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_01-26-18.log]
[testng] 01:26:18,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6176b29 - End of configuration.
[testng] [2024-04-22 01:26:18,171] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 01:26:18,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:26:18,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:18,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_01-26-18.log]
[testng] 01:26:18,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fc543eb - End of configuration.
[testng] [2024-04-22 01:26:21,003] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-04-22 01:26:21,093] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-04-22 01:26:21,110] [pool-1-thread-11] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-04-22 01:26:21,120] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-04-22 01:26:21,149] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-04-22 01:26:21,213] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-04-22 01:26:21,219] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-04-22 01:26:21,228] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-04-22 01:26:21,239] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-04-22 01:26:21,249] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-04-22 01:26:21,365] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-04-22 01:26:21,818] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-04-22 01:26:21,831] [pool-1-thread-12] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-04-22 01:26:21,947] [pool-1-thread-9] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-04-22 01:26:22,092] [pool-1-thread-6] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-04-22 01:26:22,262] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS