Started by upstream project "BIOFORMATS-test-repo" build number 362
originally caused by:
Started by upstream project "Trigger" build number 388
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1396467635662812808.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57732_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:40:38,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:40:38,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 02:40:38,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:40:38,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:40:38,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:40:38,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:40:38,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:40:38,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:40:38,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:40:38,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:40:38,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:40:38,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:40:38,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:40:38,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:40:38,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:40:38,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:40:38,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:40:38,216 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:40:38,216 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:40:38,216 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:40:38,216 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 02:40:38,217 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 02:40:38,217 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-02 02:40:38,227] [main] java.version = 17.0.2
[testng] 02:40:38,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:40:38,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:38,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_02-40-38.log]
[testng] 02:40:38,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-02 02:40:38,277] [main] testng.directory = /data
[testng] [2025-03-02 02:40:38,277] [main] testng.configDirectory = /config
[testng] [2025-03-02 02:40:38,286] [main] testng.multiplier = 1.0
[testng] [2025-03-02 02:40:38,287] [main] testng.in-memory = false
[testng] [2025-03-02 02:40:38,287] [main] testng.allow-missing = false
[testng] [2025-03-02 02:40:38,287] [main] user.language = en
[testng] [2025-03-02 02:40:38,287] [main] user.country = ${user.country}
[testng] [2025-03-02 02:40:38,288] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-02 02:40:39,990] [main] ----------------------------------------
[testng] [2025-03-02 02:40:39,991] [main] Total files: 14
[testng] [2025-03-02 02:40:39,991] [main] Scan time: 1.702 s (121 ms/file)
[testng] [2025-03-02 02:40:39,991] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-02 02:40:58,192] [pool-1-thread-1] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 02:40:58,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:40:58,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:58,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_02-40-58.log]
[testng] 02:40:58,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69d51436 - End of configuration.
[testng] [2025-03-02 02:40:58,987] [pool-1-thread-12] Initializing /data/timg/LiveOne.tif:
[testng] 02:40:58,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:40:58,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:58,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_02-40-58.log]
[testng] 02:40:58,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294c9bdc - End of configuration.
[testng] [2025-03-02 02:41:00,324] [pool-1-thread-11] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 02:41:00,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:41:00,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:00,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_02-41-00.log]
[testng] 02:41:00,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa0721d - End of configuration.
[testng] [2025-03-02 02:41:01,158] [pool-1-thread-10] Initializing /data/timg/eric-one.tif:
[testng] 02:41:01,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:41:01,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:01,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_02-41-01.log]
[testng] 02:41:01,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b196d81 - End of configuration.
[testng] [2025-03-02 02:41:02,022] [pool-1-thread-9] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 02:41:02,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:41:02,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:02,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_02-41-02.log]
[testng] 02:41:02,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71360fe5 - End of configuration.
[testng] [2025-03-02 02:41:03,396] [pool-1-thread-8] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 02:41:03,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:41:03,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:03,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_02-41-03.log]
[testng] 02:41:03,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eab00b7 - End of configuration.
[testng] [2025-03-02 02:41:04,223] [pool-1-thread-7] Initializing /data/aaron/olympus_fv500.tif:
[testng] 02:41:04,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:41:04,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:04,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_02-41-04.log]
[testng] 02:41:04,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a535ba - End of configuration.
[testng] [2025-03-02 02:41:05,102] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif:
[testng] 02:41:05,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:41:05,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:05,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_02-41-05.log]
[testng] 02:41:05,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae6d0cc - End of configuration.
[testng] [2025-03-02 02:41:05,883] [pool-1-thread-5] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 02:41:05,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:41:05,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:05,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_02-41-05.log]
[testng] 02:41:05,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437ddcf1 - End of configuration.
[testng] [2025-03-02 02:41:06,972] [pool-1-thread-4] Initializing /data/timg/eric-three.tif:
[testng] 02:41:06,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:41:06,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:06,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_02-41-06.log]
[testng] 02:41:06,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5953adbd - End of configuration.
[testng] [2025-03-02 02:41:07,727] [pool-1-thread-3] Initializing /data/timg/eric-one-3d.tif:
[testng] 02:41:07,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:41:07,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:07,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_02-41-07.log]
[testng] 02:41:07,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c8c8230 - End of configuration.
[testng] [2025-03-02 02:41:08,482] [pool-1-thread-2] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 02:41:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:41:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:08,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_02-41-08.log]
[testng] 02:41:08,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78ea91b5 - End of configuration.
[testng] [2025-03-02 02:41:16,833] [pool-1-thread-12] Initializing /data/timg/eric-three-projection.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 48 seconds
Finished: SUCCESS