Started by upstream project "BIOFORMATS-test-repo" build number 363 originally caused by: Started by upstream project "Trigger" build number 389 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7510967190956839993.sh + '[' minc = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_57870_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:33:43,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:33:43,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:33:43,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:33:43,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:33:43,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:33:43,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:33:43,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:33:43,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:33:43,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:33:43,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:33:43,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:33:43,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:33:43,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:33:43,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:33:43,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:33:43,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:33:43,775 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:33:43,775 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:33:43,775 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:33:43,776 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:33:43,776 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:33:43,777 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:33:43,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-03 01:33:43,788] [main] java.version = 1.8.0_342 [testng] 01:33:43,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:33:43,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:43,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-03_01-33-43.log] [testng] 01:33:43,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-03 01:33:43,846] [main] testng.directory = /data [testng] [2025-03-03 01:33:43,847] [main] testng.configDirectory = /config [testng] [2025-03-03 01:33:43,859] [main] testng.multiplier = 1.0 [testng] [2025-03-03 01:33:43,860] [main] testng.in-memory = false [testng] [2025-03-03 01:33:43,860] [main] testng.allow-missing = false [testng] [2025-03-03 01:33:43,860] [main] user.language = fr [testng] [2025-03-03 01:33:43,860] [main] user.country = FR [testng] [2025-03-03 01:33:43,860] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-03 01:33:44,547] [main] ---------------------------------------- [testng] [2025-03-03 01:33:44,547] [main] Total files: 15 [testng] [2025-03-03 01:33:44,548] [main] Scan time: 0.687 s (45 ms/file) [testng] [2025-03-03 01:33:44,548] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-03 01:33:54,638] [pool-1-thread-1] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: [testng] 01:33:54,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:33:54,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:54,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-03_01-33-54.log] [testng] 01:33:54,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ae5fe6 - End of configuration. [testng] [2025-03-03 01:33:57,060] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: [testng] 01:33:57,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:33:57,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:57,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-03_01-33-57.log] [testng] 01:33:57,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@edd5b14 - End of configuration. [testng] [2025-03-03 01:33:57,301] [pool-1-thread-11] Initializing /data/daren/test_32bit_float.mnc: [testng] 01:33:57,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:33:57,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:57,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-03_01-33-57.log] [testng] 01:33:57,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b7f8 - End of configuration. [testng] [2025-03-03 01:33:57,904] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: [testng] 01:33:57,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:33:57,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:57,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-03_01-33-57.log] [testng] 01:33:57,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70e2449e - End of configuration. [testng] [2025-03-03 01:33:58,209] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: [testng] 01:33:58,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:33:58,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:58,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-03_01-33-58.log] [testng] 01:33:58,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c93aee8 - End of configuration. [testng] [2025-03-03 01:33:58,434] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: [testng] 01:33:58,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:33:58,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:58,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-03_01-33-58.log] [testng] 01:33:58,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5233db1 - End of configuration. [testng] [2025-03-03 01:33:58,649] [pool-1-thread-7] Initializing /data/qa-17215/IBSR01.mnc: [testng] 01:33:58,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:33:58,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:58,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-03_01-33-58.log] [testng] 01:33:58,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a0165c - End of configuration. [testng] [2025-03-03 01:33:58,965] [pool-1-thread-6] Initializing /data/bigbrain/pm6479o.mnc: [testng] 01:33:58,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:33:58,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:58,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-03_01-33-58.log] [testng] 01:33:58,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96d52c1 - End of configuration. [testng] [2025-03-03 01:33:59,690] [pool-1-thread-5] Initializing /data/samples/N3/average_305_mask_1mm.mnc: [testng] 01:33:59,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:33:59,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:59,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-03_01-33-59.log] [testng] 01:33:59,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@209dc99b - End of configuration. [testng] [2025-03-03 01:33:59,934] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: [testng] 01:33:59,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:33:59,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:59,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-03_01-33-59.log] [testng] 01:33:59,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d57c131 - End of configuration. [testng] [2025-03-03 01:34:00,222] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: [testng] 01:34:00,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:34:00,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:00,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-03_01-34-00.log] [testng] 01:34:00,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@636b92ed - End of configuration. [testng] [2025-03-03 01:34:00,490] [pool-1-thread-2] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: [testng] 01:34:00,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:34:00,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:00,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-03_01-34-00.log] [testng] 01:34:00,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e6d481b - End of configuration. BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS