Started by upstream project "BIOFORMATS-test-repo" build number 363
originally caused by:
Started by upstream project "Trigger" build number 389
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16568587711365491912.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57893_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:30:35,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:30:35,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 02:30:35,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:30:35,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:30:35,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:30:35,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:30:35,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:30:35,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:30:36,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:30:36,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:30:36,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:30:36,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:30:36,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:30:36,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:30:36,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:30:36,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:30:36,265 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:30:36,265 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:30:36,265 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:30:36,266 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:30:36,266 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 02:30:36,266 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 02:30:36,267 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-03 02:30:36,276] [main] java.version = 1.8.0_342
[testng] 02:30:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:30:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:36,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-03_02-30-36.log]
[testng] 02:30:36,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-03 02:30:36,331] [main] testng.directory = /data
[testng] [2025-03-03 02:30:36,332] [main] testng.configDirectory = /config
[testng] [2025-03-03 02:30:36,343] [main] testng.multiplier = 1.0
[testng] [2025-03-03 02:30:36,343] [main] testng.in-memory = false
[testng] [2025-03-03 02:30:36,343] [main] testng.allow-missing = false
[testng] [2025-03-03 02:30:36,343] [main] user.language = fr
[testng] [2025-03-03 02:30:36,343] [main] user.country = FR
[testng] [2025-03-03 02:30:36,344] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-03 02:30:36,820] [main] ----------------------------------------
[testng] [2025-03-03 02:30:36,820] [main] Total files: 19
[testng] [2025-03-03 02:30:36,820] [main] Scan time: 0.476 s (25 ms/file)
[testng] [2025-03-03 02:30:36,820] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-03 02:30:44,861] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 02:30:44,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:30:44,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:44,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-03_02-30-44.log]
[testng] 02:30:44,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dedb911 - End of configuration.
[testng] [2025-03-03 02:30:45,266] [pool-1-thread-12] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 02:30:45,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:30:45,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:45,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-03_02-30-45.log]
[testng] 02:30:45,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69577c52 - End of configuration.
[testng] [2025-03-03 02:30:45,608] [pool-1-thread-11] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:30:45,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:30:45,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:45,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-03_02-30-45.log]
[testng] 02:30:45,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b903a17 - End of configuration.
[testng] [2025-03-03 02:30:45,925] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:30:45,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:30:45,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:45,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-03_02-30-45.log]
[testng] 02:30:45,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4886a3 - End of configuration.
[testng] [2025-03-03 02:30:46,559] [pool-1-thread-9] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:30:46,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:30:46,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:46,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-03_02-30-46.log]
[testng] 02:30:46,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41962d36 - End of configuration.
[testng] [2025-03-03 02:30:46,848] [pool-1-thread-8] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:30:46,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:30:46,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:46,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-03_02-30-46.log]
[testng] 02:30:46,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e20353 - End of configuration.
[testng] [2025-03-03 02:30:47,235] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] 02:30:47,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:30:47,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:47,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-03_02-30-47.log]
[testng] 02:30:47,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@406f4b6 - End of configuration.
[testng] [2025-03-03 02:30:47,716] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:30:47,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:30:47,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:47,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-03_02-30-47.log]
[testng] 02:30:47,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76352484 - End of configuration.
[testng] [2025-03-03 02:30:48,126] [pool-1-thread-5] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 02:30:48,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:30:48,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:48,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-03_02-30-48.log]
[testng] 02:30:48,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c16470 - End of configuration.
[testng] [2025-03-03 02:30:48,516] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:30:48,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:30:48,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:48,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-03_02-30-48.log]
[testng] 02:30:48,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3166f7d4 - End of configuration.
[testng] [2025-03-03 02:30:49,040] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:30:49,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:30:49,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:49,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-03_02-30-49.log]
[testng] 02:30:49,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da0b9ac - End of configuration.
[testng] [2025-03-03 02:30:49,444] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW:
[testng] 02:30:49,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:30:49,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:49,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-03_02-30-49.log]
[testng] 02:30:49,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48519a86 - End of configuration.
[testng] [2025-03-03 02:30:58,606] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW:
[testng] [2025-03-03 02:30:58,975] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] [2025-03-03 02:30:59,344] [pool-1-thread-4] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2025-03-03 02:30:59,764] [pool-1-thread-7] Initializing /data/samples/100R PICT0001.MRW:
[testng] [2025-03-03 02:31:00,159] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2025-03-03 02:31:00,592] [pool-1-thread-12] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2025-03-03 02:31:01,005] [pool-1-thread-5] Initializing /data/samples/400R PICT0003.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS