Started by upstream project "BIOFORMATS-test-repo" build number 364
originally caused by:
Started by upstream project "Trigger" build number 390
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3848318043542155099.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57985_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:26:47,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:26:47,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
[testng] 00:26:47,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:47,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:47,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:26:47,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:26:47,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:26:47,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:47,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:47,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:26:47,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:26:47,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:26:47,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:26:47,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:26:47,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:26:47,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:26:47,573 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:26:47,573 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:26:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:26:47,573 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:26:47,573 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
[testng] 00:26:47,574 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
[testng] 00:26:47,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-04 00:26:47,583] [main] java.version = 11.0.16
[testng] 00:26:47,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:26:47,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:47,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_00-26-47.log]
[testng] 00:26:47,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
[testng] [2025-03-04 00:26:47,631] [main] testng.directory = /data
[testng] [2025-03-04 00:26:47,631] [main] testng.configDirectory = /config
[testng] [2025-03-04 00:26:47,641] [main] testng.multiplier = 1.0
[testng] [2025-03-04 00:26:47,642] [main] testng.in-memory = false
[testng] [2025-03-04 00:26:47,642] [main] testng.allow-missing = false
[testng] [2025-03-04 00:26:47,642] [main] user.language = en
[testng] [2025-03-04 00:26:47,642] [main] user.country = ${user.country}
[testng] [2025-03-04 00:26:47,642] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-04 00:26:49,353] [main] ----------------------------------------
[testng] [2025-03-04 00:26:49,353] [main] Total files: 22
[testng] [2025-03-04 00:26:49,353] [main] Scan time: 1.711 s (77 ms/file)
[testng] [2025-03-04 00:26:49,353] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-04 00:28:40,528] [pool-1-thread-1] Initializing /data/imagej/hela-cells.zip:
[testng] 00:28:40,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:28:40,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:40,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_00-28-40.log]
[testng] 00:28:40,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6899945b - End of configuration.
[testng] [2025-03-04 00:28:43,804] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 00:28:43,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:28:43,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:43,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-04_00-28-43.log]
[testng] 00:28:43,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6856aa68 - End of configuration.
[testng] [2025-03-04 00:28:48,636] [pool-1-thread-11] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:28:48,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:28:48,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:48,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-04_00-28-48.log]
[testng] 00:28:48,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d90431 - End of configuration.
[testng] [2025-03-04 00:28:58,904] [pool-1-thread-10] Initializing /data/imagej/m51.zip:
[testng] 00:28:58,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:28:58,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:58,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_00-28-58.log]
[testng] 00:28:58,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101a52f8 - End of configuration.
[testng] [2025-03-04 00:29:01,046] [pool-1-thread-9] Initializing /data/imagej/confocal-stack.zip:
[testng] 00:29:01,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:29:01,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:01,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_00-29-01.log]
[testng] 00:29:01,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa24911 - End of configuration.
[testng] [2025-03-04 00:29:14,600] [pool-1-thread-8] Initializing /data/imagej/xrays.zip:
[testng] 00:29:14,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:29:14,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:14,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_00-29-14.log]
[testng] 00:29:14,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33263f65 - End of configuration.
[testng] [2025-03-04 00:29:16,471] [pool-1-thread-7] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:29:16,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:29:16,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:16,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_00-29-16.log]
[testng] 00:29:16,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7055fa48 - End of configuration.
[testng] [2025-03-04 00:29:19,728] [pool-1-thread-6] Initializing /data/imagej/fat-cells.zip:
[testng] 00:29:19,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:29:19,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:19,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_00-29-19.log]
[testng] 00:29:19,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3e8604 - End of configuration.
[testng] [2025-03-04 00:29:24,129] [pool-1-thread-5] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 00:29:24,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:29:24,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:24,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_00-29-24.log]
[testng] 00:29:24,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b58e326 - End of configuration.
[testng] [2025-03-04 00:29:26,523] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] 00:29:26,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:29:26,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:26,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_00-29-26.log]
[testng] 00:29:26,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7667eb9e - End of configuration.
[testng] [2025-03-04 00:29:28,598] [pool-1-thread-3] Initializing /data/imagej/confocal-series.zip:
[testng] 00:29:28,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:29:28,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:28,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_00-29-28.log]
[testng] 00:29:28,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22bea41 - End of configuration.
[testng] [2025-03-04 00:29:36,858] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] 00:29:36,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:29:36,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:36,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_00-29-36.log]
[testng] 00:29:36,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124b54a8 - End of configuration.
[testng] [2025-03-04 00:30:03,380] [pool-1-thread-10] Initializing /data/imagej/mri-stack.zip:
[testng] [2025-03-04 00:30:05,500] [pool-1-thread-8] Initializing /data/samples/sdub.zip:
[testng] [2025-03-04 00:30:07,693] [pool-1-thread-4] Initializing /data/imagej/se3.zip:
[testng] [2025-03-04 00:30:20,984] [pool-1-thread-5] Initializing /data/imagej/watershed-animation.zip:
[testng] [2025-03-04 00:30:26,020] [pool-1-thread-8] Initializing /data/imagej/FluorescentCells.zip:
[testng] [2025-03-04 00:30:40,707] [pool-1-thread-10] Initializing /data/imagej/RatBrain.zip:
[testng] [2025-03-04 00:30:43,127] [pool-1-thread-1] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] [2025-03-04 00:30:51,393] [pool-1-thread-12] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2025-03-04 00:31:00,300] [pool-1-thread-2] Initializing /data/imagej/flybrain.zip:
[testng] [2025-03-04 00:31:08,564] [pool-1-thread-5] Initializing /data/samples/bat-cochlea-volume.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 47 seconds
Finished: SUCCESS