Started by upstream project "BIOFORMATS-test-repo" build number 364
originally caused by:
Started by upstream project "Trigger" build number 390
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14463895672494091040.sh
+ '[' cellh5 = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57986_merge_ci -v /uod/idr/repos/curated/cellh5:/data -v /uod/idr-scratch/merge-ci/curated/cellh5:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:27:03,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:27:03,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
[testng] 00:27:03,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:27:03,193 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:27:03,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:27:03,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:27:03,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:27:03,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:27:03,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:27:03,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:27:03,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:27:03,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:27:03,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:27:03,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:27:03,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:27:03,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:27:03,380 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:27:03,380 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:27:03,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:27:03,381 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:27:03,381 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
[testng] 00:27:03,382 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
[testng] 00:27:03,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-04 00:27:03,390] [main] java.version = 11.0.16
[testng] 00:27:03,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:27:03,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:03,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-04_00-27-03.log]
[testng] 00:27:03,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
[testng] [2025-03-04 00:27:03,437] [main] testng.directory = /data
[testng] [2025-03-04 00:27:03,437] [main] testng.configDirectory = /config
[testng] [2025-03-04 00:27:03,446] [main] testng.multiplier = 1.0
[testng] [2025-03-04 00:27:03,447] [main] testng.in-memory = false
[testng] [2025-03-04 00:27:03,448] [main] testng.allow-missing = false
[testng] [2025-03-04 00:27:03,448] [main] user.language = en
[testng] [2025-03-04 00:27:03,448] [main] user.country = ${user.country}
[testng] [2025-03-04 00:27:03,448] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-04 00:27:04,056] [main] ----------------------------------------
[testng] [2025-03-04 00:27:04,057] [main] Total files: 11
[testng] [2025-03-04 00:27:04,057] [main] Scan time: 0.608 s (55 ms/file)
[testng] [2025-03-04 00:27:04,057] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 10 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-04 00:31:12,413] [pool-1-thread-1] Initializing /data/public/samples/reduced/0038.ch5:
[testng] 00:31:12,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:31:12,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:12,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-04_00-31-12.log]
[testng] 00:31:12,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@194d3085 - End of configuration.
[testng] [2025-03-04 00:31:13,214] [pool-1-thread-10] Initializing /data/public/samples/full/0041.ch5:
[testng] 00:31:13,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:31:13,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:13,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-04_00-31-13.log]
[testng] 00:31:13,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a10d56 - End of configuration.
[testng] [2025-03-04 00:31:13,725] [pool-1-thread-9] Initializing /data/public/samples/full/0045.ch5:
[testng] 00:31:13,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:31:13,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:13,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-04_00-31-13.log]
[testng] 00:31:13,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3690f01a - End of configuration.
[testng] [2025-03-04 00:31:14,106] [pool-1-thread-8] Initializing /data/public/samples/full/0037.ch5:
[testng] 00:31:14,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:31:14,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:14,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-04_00-31-14.log]
[testng] 00:31:14,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01ef3d - End of configuration.
[testng] [2025-03-04 00:31:14,665] [pool-1-thread-7] Initializing /data/public/samples/full/0046.ch5:
[testng] 00:31:14,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:31:14,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:14,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-04_00-31-14.log]
[testng] 00:31:14,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@254e426d - End of configuration.
[testng] [2025-03-04 00:31:15,068] [pool-1-thread-6] Initializing /data/public/samples/full/0013.ch5:
[testng] 00:31:15,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:31:15,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:15,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-04_00-31-15.log]
[testng] 00:31:15,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eedfe0 - End of configuration.
[testng] [2025-03-04 00:31:15,672] [pool-1-thread-5] Initializing /data/public/idr0013/00001_01.ch5:
[testng] 00:31:15,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:31:15,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:15,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-04_00-31-15.log]
[testng] 00:31:15,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7206e53f - End of configuration.
[testng] [2025-03-04 00:31:16,122] [pool-1-thread-4] Initializing /data/public/samples/full/0042.ch5:
[testng] 00:31:16,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:31:16,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:16,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-04_00-31-16.log]
[testng] 00:31:16,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b1b01a2 - End of configuration.
[testng] [2025-03-04 00:31:16,547] [pool-1-thread-3] Initializing /data/public/samples/full/0040.ch5:
[testng] 00:31:16,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:31:16,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:16,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-04_00-31-16.log]
[testng] 00:31:16,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@354153a1 - End of configuration.
[testng] [2025-03-04 00:31:17,016] [pool-1-thread-2] Initializing /data/public/samples/full/0039.ch5:
[testng] 00:31:17,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:31:17,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:17,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-04_00-31-17.log]
[testng] 00:31:17,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a938eb6 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 530, Failures: 0, Skips: 10
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 minutes 24 seconds
Finished: SUCCESS