Started by upstream project "BIOFORMATS-test-repo" build number 365
originally caused by:
Started by upstream project "Trigger" build number 391
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4115145414028286234.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58144_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:23:17,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:23:17,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 00:23:17,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:17,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:17,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:23:17,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:23:17,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:23:17,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:17,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:17,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:23:17,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:23:17,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:23:17,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:23:17,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:23:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:23:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:23:17,999 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:23:17,999 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:23:17,999 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:23:18,000 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:23:18,000 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 00:23:18,000 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 00:23:18,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-05 00:23:18,010] [main] java.version = 17.0.2
[testng] 00:23:18,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:23:18,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:18,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_00-23-18.log]
[testng] 00:23:18,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-05 00:23:18,062] [main] testng.directory = /data
[testng] [2025-03-05 00:23:18,063] [main] testng.configDirectory = /config
[testng] [2025-03-05 00:23:18,073] [main] testng.multiplier = 1.0
[testng] [2025-03-05 00:23:18,074] [main] testng.in-memory = false
[testng] [2025-03-05 00:23:18,074] [main] testng.allow-missing = false
[testng] [2025-03-05 00:23:18,074] [main] user.language = en
[testng] [2025-03-05 00:23:18,075] [main] user.country = ${user.country}
[testng] [2025-03-05 00:23:18,075] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-05 00:23:41,684] [main] ----------------------------------------
[testng] [2025-03-05 00:23:41,684] [main] Total files: 21
[testng] [2025-03-05 00:23:41,685] [main] Scan time: 23.609 s (1124 ms/file)
[testng] [2025-03-05 00:23:41,685] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-05 00:24:21,194] [pool-1-thread-1] Initializing /data/stefan/001_q06.txt:
[testng] 00:24:21,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:24:21,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:21,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_00-24-21.log]
[testng] 00:24:21,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fd453c - End of configuration.
[testng] [2025-03-05 00:24:22,445] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt:
[testng] 00:24:22,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:24:22,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:22,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_00-24-22.log]
[testng] 00:24:22,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c50df6c - End of configuration.
[testng] [2025-03-05 00:24:25,765] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt:
[testng] 00:24:25,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:24:25,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:25,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_00-24-25.log]
[testng] 00:24:25,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@592856aa - End of configuration.
[testng] [2025-03-05 00:24:27,734] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt:
[testng] 00:24:27,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:24:27,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:27,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_00-24-27.log]
[testng] 00:24:27,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572bfd3c - End of configuration.
[testng] [2025-03-05 00:24:31,321] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt:
[testng] 00:24:31,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:24:31,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:31,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_00-24-31.log]
[testng] 00:24:31,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c45eef0 - End of configuration.
[testng] [2025-03-05 00:24:34,677] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] 00:24:34,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:24:34,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:34,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_00-24-34.log]
[testng] 00:24:34,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b43323d - End of configuration.
[testng] [2025-03-05 00:24:36,237] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 00:24:36,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:24:36,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:36,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_00-24-36.log]
[testng] 00:24:36,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1549d - End of configuration.
[testng] [2025-03-05 00:24:37,909] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt:
[testng] 00:24:37,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:24:37,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:37,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_00-24-37.log]
[testng] 00:24:37,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cfb85de - End of configuration.
[testng] [2025-03-05 00:24:39,679] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt:
[testng] 00:24:39,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:24:39,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:39,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_00-24-39.log]
[testng] 00:24:39,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ca8e4f0 - End of configuration.
[testng] [2025-03-05 00:24:41,358] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt:
[testng] 00:24:41,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:24:41,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:41,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_00-24-41.log]
[testng] 00:24:41,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d4a7ba0 - End of configuration.
[testng] [2025-03-05 00:24:42,771] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt:
[testng] 00:24:42,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:24:42,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:42,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_00-24-42.log]
[testng] 00:24:42,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10235c4 - End of configuration.
[testng] [2025-03-05 00:24:44,470] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt:
[testng] 00:24:44,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:24:44,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:44,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_00-24-44.log]
[testng] 00:24:44,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab18ff7 - End of configuration.
[testng] [2025-03-05 00:25:08,877] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt:
[testng] [2025-03-05 00:25:11,059] [pool-1-thread-8] Initializing /data/stefan/001_q15.txt:
[testng] [2025-03-05 00:25:12,885] [pool-1-thread-7] Initializing /data/stefan/001_q10.txt:
[testng] [2025-03-05 00:25:17,910] [pool-1-thread-11] Initializing /data/stefan/001_q11.txt:
[testng] [2025-03-05 00:25:21,956] [pool-1-thread-5] Initializing /data/stefan/001_q04.txt:
[testng] [2025-03-05 00:25:23,694] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 35 seconds
Finished: SUCCESS