Started by upstream project "BIOFORMATS-test-repo" build number 365
originally caused by:
Started by upstream project "Trigger" build number 391
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17521668226952112086.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58150_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:26:05,183 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:26:05,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 00:26:05,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:05,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:26:05,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:26:05,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:26:05,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:26:05,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:05,186 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:26:05,187 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:26:05,187 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:26:05,188 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:26:05,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:26:05,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:26:05,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:26:05,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:26:05,380 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:26:05,380 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:26:05,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:26:05,381 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:26:05,381 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 00:26:05,381 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 00:26:05,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-05 00:26:05,390] [main] java.version = 17.0.2
[testng] 00:26:05,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:26:05,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:26:05,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_00-26-05.log]
[testng] 00:26:05,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-05 00:26:05,437] [main] testng.directory = /data
[testng] [2025-03-05 00:26:05,437] [main] testng.configDirectory = /config
[testng] [2025-03-05 00:26:05,446] [main] testng.multiplier = 1.0
[testng] [2025-03-05 00:26:05,446] [main] testng.in-memory = false
[testng] [2025-03-05 00:26:05,446] [main] testng.allow-missing = false
[testng] [2025-03-05 00:26:05,446] [main] user.language = en
[testng] [2025-03-05 00:26:05,447] [main] user.country = ${user.country}
[testng] [2025-03-05 00:26:05,447] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-05 00:26:05,893] [main] ----------------------------------------
[testng] [2025-03-05 00:26:05,893] [main] Total files: 22
[testng] [2025-03-05 00:26:05,893] [main] Scan time: 0.446 s (20 ms/file)
[testng] [2025-03-05 00:26:05,893] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-05 00:28:17,140] [pool-1-thread-1] Initializing /data/imagej/fat-cells.zip:
[testng] 00:28:17,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:28:17,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:17,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_00-28-17.log]
[testng] 00:28:17,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49fc4804 - End of configuration.
[testng] [2025-03-05 00:28:23,214] [pool-1-thread-12] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:28:23,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:28:23,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:23,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_00-28-23.log]
[testng] 00:28:23,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d0197e - End of configuration.
[testng] [2025-03-05 00:28:27,836] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 00:28:27,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:28:27,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:27,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_00-28-27.log]
[testng] 00:28:27,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration.
[testng] [2025-03-05 00:28:31,537] [pool-1-thread-10] Initializing /data/imagej/xrays.zip:
[testng] 00:28:31,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:28:31,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:31,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_00-28-31.log]
[testng] 00:28:31,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6057f525 - End of configuration.
[testng] [2025-03-05 00:28:33,964] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip:
[testng] 00:28:33,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:28:33,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:33,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_00-28-33.log]
[testng] 00:28:33,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bef57b1 - End of configuration.
[testng] [2025-03-05 00:28:45,218] [pool-1-thread-8] Initializing /data/imagej/m51.zip:
[testng] 00:28:45,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:28:45,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:45,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_00-28-45.log]
[testng] 00:28:45,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddc5575 - End of configuration.
[testng] [2025-03-05 00:28:48,709] [pool-1-thread-7] Initializing /data/imagej/se3.zip:
[testng] 00:28:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:28:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:48,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_00-28-48.log]
[testng] 00:28:48,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@139e39f9 - End of configuration.
[testng] [2025-03-05 00:28:59,415] [pool-1-thread-6] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 00:28:59,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:28:59,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:59,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_00-28-59.log]
[testng] 00:28:59,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@88b8aa - End of configuration.
[testng] [2025-03-05 00:29:03,409] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 00:29:03,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:29:03,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:03,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_00-29-03.log]
[testng] 00:29:03,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b66b4 - End of configuration.
[testng] [2025-03-05 00:29:08,313] [pool-1-thread-4] Initializing /data/imagej/RatBrain.zip:
[testng] 00:29:08,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:29:08,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:08,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_00-29-08.log]
[testng] 00:29:08,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3486388a - End of configuration.
[testng] [2025-03-05 00:29:11,502] [pool-1-thread-3] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:29:11,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:29:11,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:11,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_00-29-11.log]
[testng] 00:29:11,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c13523 - End of configuration.
[testng] [2025-03-05 00:29:22,242] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip:
[testng] 00:29:22,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:29:22,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:29:22,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_00-29-22.log]
[testng] 00:29:22,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d841e - End of configuration.
[testng] [2025-03-05 00:30:00,084] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip:
[testng] [2025-03-05 00:30:05,475] [pool-1-thread-8] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] [2025-03-05 00:30:22,702] [pool-1-thread-11] Initializing /data/imagej/confocal-stack.zip:
[testng] [2025-03-05 00:30:35,737] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] [2025-03-05 00:30:39,008] [pool-1-thread-6] Initializing /data/samples/sdub.zip:
[testng] [2025-03-05 00:30:54,359] [pool-1-thread-6] Initializing /data/imagej/mri-stack.zip:
[testng] [2025-03-05 00:30:58,634] [pool-1-thread-2] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2025-03-05 00:31:16,024] [pool-1-thread-5] Initializing /data/imagej/watershed-animation.zip:
[testng] [2025-03-05 00:31:24,681] [pool-1-thread-12] Initializing /data/imagej/FluorescentCells.zip:
[testng] [2025-03-05 00:31:35,082] [pool-1-thread-4] Initializing /data/imagej/confocal-series.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 22 seconds
Finished: SUCCESS